XLOC_021922 (camk1gb)


Basic Information

Item Value
gene id XLOC_021922
gene name camk1gb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39558508 ~ 39597901 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043414
GCTTTTGGCAGGAGAGTCGGAGCGAGCATCTTTTGCGCACTTGCCTCTAGAAATCCCTGTTGAAGCTCACGCAGAAATGGGCCGAAAGGAGGGCGAATATGAATGGAAAAAGAGCACGGATAACATCCAGGATGTGTTTGACTTCATGGATGTTCTTGGATCGGGAGCCTTTTCCGAGGTCTTCATGGTGAAGGAGAGGAAAACAGGCAAGCTTTTCGCCATGAAGTGTGTGAAGAAGAAGAACAAAAGAGACATCAACCTTGAGAATGAAATCGCGGTGTTGAGAAAGATCAAACATGAAAACGTGGTTTGCCTGGAGGACTTCTATGAAAGTCGGACACATTATTACCTCGTCATGCAGCTAGTTTCAGGCGGTGAGCTGTTTGATCGTATCCTGGACCGCGGCATGTACTCAGAGATGGATGCTAGTTCGGTTATCAGACAGGTGCTTGAGGCTGTCAGCTACCTGCACAATAACGGCATCGTCCACCGAGACCTCAAGCCAGAAAATCTGCTCTACTACAGCCCTGATGAAAACTCCAAGATCATGATCAGTGATTTCGGCCTGTCCAAGATGGAGGATAACGGGGTCATGTCTACAGCCTGTGGGACGCCAGGATATGTGGCTCCTGAAGTGTTGGCTCAGAAACCCTACAGTAAAGCTGTTGACTGCTGGTCTATTGGAGTCATCACTTATATCCTtctCTGTGGTTATCCTCCTTTCTATGAAGAAACTGAGACGCGTCTGTTTTCTAAGATCATGAAGGGGCAGTATGAGTTTGATTCACCCTTCTGGGACGACATCTCTGAGTCTGCAAAGGACTTCATTCGCAACATGATGCAGAAAAATCCTAAGATGCGTTTTAACACCGAACAGGCCCTCAGACACCCCTGGATTATCGGGAAGACGGCACGCAGTCAGGACATCTACCACTCGGTCAGCGAGCAGATGCAGAAAAACTTCGCCAAGTCCAAGTGGAAGCAAGCCTTCAACGCCACAGTGGCCATTAACCACATGAAGAAGCTCCAGCAGGCTCATTCTGAGGCCTGTGTGCGCCTCAAAGACAGCCCTCGAGATGTGCCCGAAATCAAAGTCATCGCCTCCTCCACACCTGAATCCGTCCGCAAGAAGCTGCTCTCTGAGACCCCCGAGCCCAACGGCAGCATGAACGTCCCATGTGGATCCACAGAGGCCAAGAGTCAGTATCACCCAATGCGGGTCAGTCACAGCGAGACCACTCACGTTGGCACCCTCACCATAGCGGAGAAGGGCAAACACGTGTACCACTCGGAGCCAGCCGATCTCAATGGGTATGCAAAAAGAAGCTCCAATCGTCCTGGGCAGAACCTGCAGACTGGTGTTTGCTCTGTCATGTGATCGGCTGCACTGTAAAAGCATGATTTTTGACAGGTCTGTGACCTCTTACCGGCCGCTGGCTGCTTTCTGTGGGCAGATCCCGCTGCTCTGCCCCGGTCAAAAGTGTTGTCAGGACAGTTGGCCACCGGCCCGCACCGTCCTCCAATCCTGAAGTTTAGGAGAGTGCCTCCAAATTCTGCAAACAGAGCACAAATACAGCCcttcacacactcacaaacaatgCAGTATCCTTGTACCATGATTGGTGCCGAACATCAAAACtctgtatttttcatttgacGAAGCAGTTTTACATGATCAAGGTCAATTAATCTCTCTGTATTACCACACATTTGGAGCAGGGGTCCGTGTTACTGGACTCTTGAGTATTATTTTGTGCTTTTGTACATATTATTCTCCGTGATGCATGGCTAGTTGGTAAAATGTGCAATAATGTGTCATTTTAGTGTGTAAAAACCTCAGTACACTTCACTGTAAGACATATTAgattgtagggctgcacaatattgggcaaaaaaataaatattatctcTATTTCGGACAATTTAGATTATTTTGGATTGGGATTATTCTGTAGGGCAAtgaatctgcataaaatataataaacaatctacaagcatggATAAATTCGatataaaaaaaagatacaaatgaaataaacaatgcttTACGGGTTTTCTGAGGAGTCCAACAGTATTCTGgtgtacagtaactgaatgagcAAATGTCAAATAATACTGTGTAGTCTTCGttgtataattaattttatcAAATTAATCATTATGaaagttacaaacagtaaaataaaatctttttaaaatcctCATGCAATCACAGCCCTAAAAAAAACGCATGcaaactataatccagactccaCATTGCATATATTGCGATGTGAGTATTGCAAATGGTCACATTGAAATATCCATGATGaactgatatattgtgcagctctactaggggccgatcacaccgaacgtgCTTTTTGCAATGAGAGGCACCTTTTTTGAATGGTTTTCTAATGGGGCGTTCACATCTGATGCGGCTTGCATAAATAAAATTGCACTATTCGCGCATGATGCATGATCATTTTGATTTTATTCGCCTCATTCACGCATCAAATTCGCTTTATTCATGTATCAAATTCATTTCACAATACTTCTGTGTGCCCAGTGACTCTAGTTTCTTTGCTAAATGGCTACTATGGAtgttattgagagagtagctgtgcttcAGGTGCTTTAgtaaggctgaaaaacagcgtagatttaTTTGGTGCTAtatctgagtccactagatcctttcacaTGTGCACCCATCTCTGTAAGTTTAccactcctccagaaactatacctagATGATAGAAGCTTTCAGGGGTACTTcggactgagccgagcccagtttgatgagctgttgtccggtgtcagcagcaggatttcccctcgggacacgCATTACAGGCACTGCGTTATAATCATACCCATACTAGAACAAGCTTCTGTTTGATTGACACGTCGTGAATgtctgctaaagttcagattttccaacttgagtGATTTGTGTGTTAAGCGCATTAAACCGTTCAATTTGCACCGCTTCATTCAAATGAATCGCATCATTTGTACCGTTTTATTCGCACCAATTGcgttattttattgcatttatttgtgcaaatagtGTCATTTGTACCGCTTTGTTTGTGCGAATTGCGTCATTTGCAACACTTCATATGTATGAATCGTGACATTTGCAACGATTCATTCGCACGAATCACGTCATTTGCACCGCTTCGTTTGCACGAATCGCATCATTTGCACAGCTTCATTCGCACGAACCGCATCATTTGCACCAATTTATTCTCACATATCCCGTCATTTGCACAGCTTCATTCACACAAATCGCGTCATTTGCACCGGGTCATTTGCACCGCTTCATTGGTGCGAATCATGTCATTCACACCGCTTCATTAACGCGAACCATTGCCACTGTTTTATTCGCACGAATTGCATCATTGGTATTGCTTCATACATGCGAATCGTGTCATTGGCATTGCTCCATTCACATGAATCGTTTCATTGGCATTGCTTCATTCGCGCGAGTCGTTTTATTGACATTGCTTCATTCACACGAATCGTGTCATTGGCATTGCTTCATTCACGCAAATTATTTTATTGGCATTGCTTCATTCGCGTGAATCGTTTTATTGACATTGCTTCGTTCACGCAAATTATTTTATTGGCATTGCTTCATTCGCGTGAATCGTTTTATTGACATTGCTTCATTCACGCAAATTATTTTATTGGCATTGCTTCATTCGCGTGAATCGTTTTATTGGCATTGCTTCATTCACGCAAATTATTTTATTGGCATTGCTTCATTCGCGTGAATCGTTTTATTGACATTGCTTCATTCACTCGAATCGTATCATTGGCATTGCTTCATTCACGCGAATTGTGTAATTTGCTCCACGTCATTTGCACCGCTTCATTCGCACGAATCATGTCGTTTGCACAGCTTTATTCACACGAATAGCaacgcaggatgtctatttgtgtCTTTGCTTTGACAACATATGAATCACTTGTGCTTGGCGCTTTGAATGAGGTGACGTGAATGATGTAATTGAAGCAGTGCAAATGACGTGATACGTGCAAATGACGCAttcaggatgtctattcgcatctttcCTTTGACTTTACATTTAAATCACTCGCGCATGACGCTTAATCCGCATCTGATGTGAAGGCATAATAATGCTCTCACATATATGCCATTGCATTCTGTGCGCCTGCAGTTGAAAAATAGGCAACTGAGAGGAAAAAGCCAGCTACGTTAGTCGCATCTTTTTTCATtctcaaatgaaagcagaggcaaaGGTtttgttgaggtgacagcagtgtttgtgttgtcaagatgactaaAGAGTAAATACTGTATAAGCTTATATGAAAGTATACACAAGCTGCACAATACCAATGTCCCTTTCAGGCAAGTCGTTTCACTCAGGGGCCACCTTTTTTAATGCTTCTCAGgcttgaatggggaaacatcaaattctccaaaattgcttgcttaatattaaatttcataTCAGGAATCACcaatagagttaaacaacagCTGTCGCTTTTGTCTAATTTCTAAACGTTCGAATcacaaaaaatctgcagaaatttgcATCTAGTCCGAGCCCCTTCCACGGAGAATcctcagtctatagcgatcgctgattggcttctgtacttgaaggcggggcttcatttgctATATTGACGTtaaacttttccccattcaaaacgatatgagtgacatgtcttgtgtattctatagtctgtGACAATACACAACTGATTGAGTAGTTGCCTAGCAACAAAAAAAGCGCAGCACACTACTTTTTTCTAGTCAACAATAAAAGGCAGCGCCTTGCTTTCTCAGATCAAAAAAGCGAATTGGGTATGATTGGCCCCTAAGCTGGAAGTTATTCGATAATTAGTTTTCTCTTTTTTCGGGTACTTTAACTAGAAAGGTTTATTTTTGTAATGTGTTtatcaattatatatttttttcgtaaTGAAATGGATACAAATTGTTTATTGCCTTCTTCCACCACCATAGTTGTTTTGTGCACTGTAATGCAGTACTAATACCCGACACACATGAACTTTACTGTTAGAAATACGGTATTGTTACTAATTATCGTGTAAGAAACTGAAAATGAAGTGTCTTCTGAACTAGAGGAGGTTTATGTTTGTGTAGACAGCTATACTGTCAGTGCTTTGTGTGATATTTTTACTAATAAACCCTCATATGTAAA

Function

symbol description
camk1gb Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Acts upstream of or within locomotor rhythm. Is expressed in diencephalon; sensory system; and yolk syncytial layer. Orthologous to human CAMK1G (calcium/calmodulin dependent protein kinase IG).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0045475 locomotor rhythm biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1694 Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Acts upstream of or within locomotor rhythm. Is expressed in diencephalon; sensory system; and yolk syncytial layer. Orthologous to human CAMK1G (calcium/calmodulin dependent protein kinase IG).

Ensembl:

ensembl_id ENSDARG00000008788

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043414 True 5192 mRNA 0.42 13 39558508 39597901

Neighbor

gene id symbol gene type direction distance location
XLOC_021921 mical1 coding upstream 29520 39461989 ~ 39528988 (+)
XLOC_021920 src coding upstream 107808 39346774 ~ 39450700 (+)
XLOC_021919 kcng1 coding upstream 225195 39281229 ~ 39333313 (+)
XLOC_021918 CABZ01054023.1 coding upstream 374199 39183246 ~ 39184309 (+)
XLOC_021917 nfatc2a coding upstream 393642 39089574 ~ 39164866 (+)
XLOC_021923 g0s2 coding downstream 8207 39606108 ~ 39607679 (+)
XLOC_021924 otud3 coding downstream 13787 39611688 ~ 39626681 (+)
XLOC_021925 tmco4 coding downstream 97926 39695827 ~ 39727347 (+)
XLOC_021926 NA coding downstream 154587 39752488 ~ 39752964 (+)
XLOC_021927 si:ch73-217b7.1 coding downstream 256665 39854566 ~ 39941025 (+)
XLOC_021914 NA non-coding upstream 1003213 38537568 ~ 38555295 (+)
XLOC_021913 FO904868.1 non-coding upstream 1222624 38335760 ~ 38335884 (+)
XLOC_021912 CABZ01070579.1 non-coding upstream 1261719 38266163 ~ 38296789 (+)
XLOC_021909 NA non-coding upstream 1463948 38091326 ~ 38094560 (+)
XLOC_021932 CABZ01067001.1 non-coding downstream 708343 40306244 ~ 40306371 (+)
XLOC_021935 CR354556.1 non-coding downstream 868601 40466502 ~ 40472088 (+)
XLOC_021936 CR354556.3 non-coding downstream 879319 40477220 ~ 40480582 (+)
XLOC_021937 NA non-coding downstream 926493 40524394 ~ 40526983 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_00506140_00517386 CAMK1GB, CAMK1G coding CI01000001 null 505754 ~ 517386 (-)