XLOC_021937


Basic Information

Item Value
gene id XLOC_021937
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40524394 ~ 40526983 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044898
ctttaaagtaaacCTTGATATACAAATAAGAAATATTCAGCAGAACAGTTTAATCTCAGACAGGAAACAGACAACACTTTATTTCTCAGATAAACCCAGTAACAAAACATCacagttaaaacaaacaaaaaaaatcacaccaaaaaaaaaaaaaaaaaaaaaaaagaatttatatttgattttagttttcatttcgcTTTTTGTTGAGAACAAATGACCTGAACAAATGGAGGTGACAATCAGgttgaaaataataacattaaaaattgcaaaaaacttCGGATGCCTACGGCTGAAATCCACTCACTCGATTAGTGTGCTGCAGTCTGAGGACTACTTACAACTACAAATTACACCAGCTGATAAAGCTTGTCTTTCCCAGAGTTCAATGCATTGTAGTCCAGGGCTCCTCACAGCAACACATGCAAATCCATGAAACAGATAAAGCACACCAAGATGAGACAGACGAATGAAGACAAGTCGCTAAAAATAAACACTCACACGCAGTTAAAGAGTTTTAAACCTCACATTATGAAACACTATAAAGTATTAAATGCAAGATGACTGAAGGTTTTCTTATGACTAGAGCATGTTAAAGAGTCCTTGGCAAAACTACAATAAACTTATTTCTTGTTAGATTTTGCGTTTGGAATTATGCTGGTATTGCATCTAATGCTTGCTCTTTTCCCAAAACTTGTCACTTGCTGCAGATTAAAAGCCTGCACACTAGGTGGCGCATAACAAAATGTTCCGACATTTGCATTAATGTGCTGACTGATGAATTAAAAAGCCAGCAAATTTCGATTTACAGCGGAACTGTgcaattttaaactattaaacttGAAAGTGATGTCAcaaaaaagtcattttattttattttatcgtcCGAAAAAATGTAGTTAGTCATTTTCTAAAGCCCTTGAAGAATCATTAGGGTGAAAACCAACGCGTGATGTTCTTATGACCTCATAACCACTGGATAATGGTCATGAGCAATGCTGCGAAAATGAAAACTTGTTGAGAAAGTGTTCATATTTCTCCACGAAACCAGTAGAAATTATGTATTATACACAAATATGAAATGAAACCTGCATTTAGGATAGTTACGATTTTCTCCATTGTGAAATTACGCATaattaagcacatttaaaaattaagaacaaaaataaatactatttttttacGAACAAAGTGTATGCATTACAGTTATATGAACAGAAAGAAATCCAGCATTGAAAATAATGACTAATGAACAGATTAGGACATAGGtttcaaactggattcctggagggctgcagctctgcagttttgctccaaccctatcaaacacTGCTGATCTAAAACCacaagagactattaagcaggtgtgagttggaggtggttggagcttaACTATGCAGAGTTGCCATCAACTGGAGACAACTGGATTAGGATAATGAGAATTTCAGTGAAGTGTGAACTTAATAGTGTGCTTAACTTTTATGAAAATGCTgaacttttaaagggatagtgcacctaaaaatgataatttagtcataatttactcattttCCAATTGTTCCAAATCCGTTTGAGgttgttctttttttttttttttgttcttcaatACATCTtgcacaaaagaggatattttgtagaatgctggaaacctgtaactattgacttccatagaatttgtttttccaactgtggat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044898 True 1694 lncRNA 0.34 2 40524394 40526983

Neighbor

gene id symbol gene type direction distance location
XLOC_021936 CR354556.3 coding upstream 43812 40477220 ~ 40480582 (+)
XLOC_021935 CR354556.1 coding upstream 52306 40466502 ~ 40472088 (+)
XLOC_021934 soga3b coding upstream 57996 40452157 ~ 40466398 (+)
XLOC_021933 elovl4b coding upstream 85813 40410644 ~ 40438581 (+)
XLOC_021932 CABZ01067001.1 coding upstream 218023 40306244 ~ 40306371 (+)
XLOC_021938 cdh24a coding downstream 77968 40604951 ~ 40744851 (+)
XLOC_021939 CR405692.1 coding downstream 225721 40752704 ~ 40752818 (+)
XLOC_021940 NA coding downstream 287760 40814743 ~ 40815221 (+)
XLOC_021941 NA coding downstream 331217 40858200 ~ 40866526 (+)
XLOC_021942 LO017845.1 coding downstream 381600 40908583 ~ 40938467 (+)
XLOC_021926 NA non-coding upstream 771430 39752488 ~ 39752964 (+)
XLOC_021918 CABZ01054023.1 non-coding upstream 1340085 39183246 ~ 39184309 (+)
XLOC_021944 NA non-coding downstream 478049 41005032 ~ 41019226 (+)
XLOC_021945 CABZ01056843.1 non-coding downstream 494528 41021511 ~ 41155139 (+)

Expression


Co-expression Network