XLOC_021938 (cdh24a)


Basic Information

Item Value
gene id XLOC_021938
gene name cdh24a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40604951 ~ 40744851 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043439
ATGATCCCAGCAATCACAAAGACAACAGTACCATATCATAGCCAGGGCTTCAGAATATCTAGAAAATCTCAAGTTGAAATTGAAGCCACTCCAGATTCGTTGTCTGACACAAGTGTGAAAACAGATTCTAATCCAGATTTGATAAGTAATCATTATCCCAAATCCACAAATATCCCAGAAATCACAAAGACAACTGTATCAACTTTTAGTCTGAACTCCAAAATATCTCAAGATCGTTTTGTACCTTCTGAATTAACTCCTGCAGTACAGGATATCAAGTCAGaaaaaactgcagttaaaatcaaAGTGACTCCAGTTTCATGGTTTAACCCAAGTGTGAACACAGATTCTACTCCACATTTCACAATTAATTATCCCAAATCCAAAGATATCCCAAAAATCACTCCAATCAACTCCAAAATATCACAATATAGTCCTTTAGTTGAAGAAACTGAATCTAACCAAGATGAAAAACGACTACCACTTGCCAGTGCACTGGATGGGCCATCAGATGCCAGTGGGATCCCGCTGAAACCTCCATCTGGGTTAAATAACAATGGACAGCAAGTGCAAACTATAATGATGGGCAGCCAAGATATGCCCTCACAATCCCGTAGCCGAAGAAGCTGGATATGGAACCAGTTTTTTGTGATTGAGGAATATAGTGGACCAGAACCGGTGCTAATTGGACGGCTTCATTCCAGTGTGGACAAGGGCGATGGCCggaccaaatatattttaaagggcGAAGGGGCTGGATCTGTGTTCGTCATCGACAGCCGTACTGGGAACATCCACGTCACCAAACCCTTAGACCGAGAGGAGAAGGACCAATATCGCCTTATCGCCACTGCAACAGACCGGCAGACGGGTCGAGCCCTGGAGCCCTCGTCCCAGTTCATCATCCGCGTGCAGGACATCAACGATAATCCACCGCTGTTCCAGAGCGGCCCCTACAGCGCCACCGTACCCGAGATGGCCAACATTGGCACATCGGTTATTCAAGTGACAGCCACAGATGCTGATGACCCAACCTATGGGAGCAGCGCCAAACTGGTGTATTCAGTGATTCAAGGCCAGCAGTTCTTCACTGTGGACCCACAGTCAGGGATCGTGCGCACGGCCGTGCCTGACATGGACAGAGAGGCTCAGGCTCAGTACCAGGTGGTGCTTCAGGCCAGAGACATGGGTGGCCATCAGGGGGGCCTGACAGGGACCACCACCATCACTGTGCACCTCAGTGACGTCAATGACAACCCACCTCGCTTCACCCAGAGTATGTGGTCATTTTCAGTGTCTGAATTGGCCGTCCCCGGGGTGGAGATCGGTCGTCTTTCAGCCACAGATGCAGACCTGGGTGAAAACGCACGGATGGACTTCATGATCGTGGACGGAGAGTCTGGAGACACATTCAACATAACTGGGCTGAACCAGGAGGCTGTGATTTTGTTAAACAAGGCTGTGGACTATGAGAGGCGCAGCACGTACTCGCTCGCAGTGGAGGTGCAAAACCCCAATGTGGACTCGCGCTTCCTCAGACGAGGCCCGTTTAAGGACCGGGCGATGGTGCGAATCACAGTCCTGAATGCGGATGAGCCGCCGAGGTTTTCCAGGTCTCGATATCGACTGGATGTGTCTGAAAACTGTCCTCCAGCTTGTGTAGTAGGAAGAGTGACTGCCGTGGATCCGGATACCGGCCTCAGTAACAACATAAAGTACTCGATTGATCCCGAGTCGGACCCCGAGGCTCTGTTCCGCATCGCCTCTGACAATGGCCTCATCACCACGGCCATGGAATTGGATCGAGAGCAGGAGCAATGGCACAACATTACTGTCATCGCCACACAGAGAGACAGCCCCAACCAAGTGACCAGGGTGGCTGTTTCCATCGAGACGCTGGACCTGAATGACAACAGCCCAGAGCTGGATAGACAGTACAACACAGCCGTGTGCGACTCCAGCACCGCCGGACAGGTGGTGCAGGTGATTCGAGCAGTAGATAAAGaccaaagcagctccaactctcCCATTCACTTCAGTATTCCTGCAGAATCCAGCGGTTCCCTCAACTTCTCCATCAGAGAGCGAGGagaCCACACTGCAAATCTGGTGCTCTTGTCACCCCTGAAGGCTCTTCCTCGCTCTTCCTCTTTACCCACCCTAAAAATACCCATAATGCTCCGTGACGATACGTCAGACCTAAGCAGCACAGGAACTATTACAGTTACGGTGTGTCCGTGTCAGAATGGAGGGATGTGGGCTGAGGAACAAAAACCACAAACAGACGACAAGGATAAAACGTCAGTGGCGGACTGGGAGAAACAGACGGTGTGTTCACTGCTACCATCAAACTCACCGCTGCTGGGAGTCAGTTCAGCTGCCATGTTGGCCATCCTGGCCTGTGCCTCCACTCTTCTAGTGGTGACGGCTCTCTCGCTATCATTGCGAAAGCAAAAACGGGACACTCAGTCTCCTGTGGAAGATGATGAGATCCGGGAGAACATCATCACGTATGACGATGAGGGAGGAGGAGAGGCGGATACAGCCGCTTTCGACATTGCCGCGCTAAAGAGCGCCCCGCAGAACCCGCGGCGTCCCGTTTCTGCACCGCTCTATGGGAGATACTGCTACAGCATCCAGACTCTTCCAGCTCAGAGAAACAGAGCCGGACCCTTCAACTCCAGGCTGGACATGGCCAAGTTGGCATATGTTCTGCCCACCAGCCAGAGCCAACCTGGCGGGCCTTTAGAGTGCGGTTCTGTGTTCATCAGCAAGAGCAGAGAAGGCTCTGAATGTAAAGGAGCAGACGGATCCACCGACAGCATCCCGAAGGAGAGCGAGGCAGGAAGTGAGGTCATCTCTGAAAACGACTCAACTCCTGTATCAGCAGTGGACAAGAATGGAGATATTACGCTCATCAGCACCAGCCAGAGCTCAACCAGCCTCAGCACCACAGATATACCATTCAGAACGATGGAGGGAACGCTACTGAGAAATGGTAGAGGAATAGCTTTAAACACAACCACTCTTCTTTATCCAGAATTAGTGATGCCCCTCCCAGGTGGGGCGGGCTCAGATAAAGCATCCGCCGATTCGTTGACAAATCGAATGGGCGATTTCCTGCAACACCGTCTGGCGATGGTGACCTTTGACCCCATGCAGCCGCCGTATGACTCGCTGCAGACGTACGGATTGGAGGGTGGCGGCTCACAGGCCACGTCTCTCAGCTCGCTGGAAAGCGAGGCAGAAAAAGACACGCAGGGCCAGAAACACAGTTTTGAGGAATGGGGACCCAAGTTTGACAGGTTGCTTGATATTTTTAGGGAACGAGCGACGGAAAAGGAGGATAATGCAAAGCATGAGGGCGAACGTTTGAAGGGAGAGGAAACGAACAAGACAGAGGATGAAAGTGAGACAGAAGTGCGAAATGAGATTACAATTGAATCGAAGGAGACACATAAGGGATATAAACGCAGTGTCCTGACCTAA
>TCONS_00043440
CTTCATTCCAGTGTGGACAAGGGCGATGGCCggaccaaatatattttaaagggcGAAGGGGCTGGATCTGTGTTCGTCATCGACAGCCGTACTGGGAACATCCACGTCACCAAACCCTTAGACCGAGAGGAGAAGGACCAATATCGCCTTATCGCCACTGCAACAGACCGGCAGACGGGTCGAGCCCTGGAGCCCTCGTCCCAGTTCATCATCCGCGTGCAGGACATCAACGATAATCCACCGCTGTTCCAGAGCGGCCCCTACAGCGCCACCGTACCCGAGATGGCCAACATTGGCACATCGGTTATTCAAGTGACAGCCACAGATGCTGATGACCCAACCTATGGGAGCAGCGCCAAACTGGTGTATTCAGTGATTCAAGGCCAGCAGTTCTTCACTGTGGACCCACAGTCAGGGATCGTGCGCACGGCCGTGCCTGACATGGACAGAGAGGCTCAGGCTCAGTACCAGGTGGTGCTTCAGGCCAGAGACATGGGTGGCCATCAGGGGGGCCTGACAGGGACCACCACCATCACTGTGCACCTCAGTGACGTCAATGACAACCCACCTCGCTTCACCCAGAGTATGTGGTCATTTTCAGTGTCTGAATTGGCCGTCCCCGGGGTGGAGATCGGTCGTCTTTCAGCCACAGATGCAGACCTGGGTGAAAACGCACGGATGGACTTCATGATCGTGGACGGAGAGTCTGGAGACACATTCAACATAACTGGGCTGAACCAGGAGGCTGTGATTTTGTTAAACAAGGCTGTGGACTATGAGAGGCGCAGCACGTACTCGCTCGCAGTGGAGGTGCAAAACCCCAATGTGGACTCGCGCTTCCTCAGACGAGGCCCGTTTAAGGACCGGGCGATGGTGCGAATCACAGTCCTGAATGCGGATGAGCCGCCGAGGTTTTCCAGGTCTCGATATCGACTGGATGTGTCTGAAAACTGTCCTCCAGCTTGTGTAGTAGGAAGAGTGACTGCCGTGGATCCGGATACCGGCCTCAGTAACAACATAAAGTACTCGATTGATCCCGAGTCGGACCCCGAGGCTCTGTTCCGCATCGCCTCTGACAATGGCCTCATCACCACGGCCATGGAATTGGATCGAGAGCAGGAGCAATGGCACAACATTACTGTCATCGCCACACAGAGAGACAGCCCCAACCAAGTGACCAGGGTGGCTGTTTCCATCGAGACGCTGGACCTGAATGACAACAGCCCAGAGCTGGATAGACAGTACAACACAGCCGTGTGCGACTCCAGCACCGCCGGACAGGTGGTGCAGGTGATTCGAGCAGTAGATAAAGaccaaagcagctccaactctcCCATTCACTTCAGTATTCCTGCAGAATCCAGCGGTTCCCTCAACTTCTCCATCAGAGAGCGAGGagaCCACACTGCAAATCTGGTGCTCTTGTCACCCCTGAAGGCTCTTCCTCGCTCTTCCTCTTTACCCACCCTAAAAATACCCATAATGCTCCGTGACGATACGTCAGACCTAAGCAGCACAGGAACTATTACAGTTACGGTGTGTCCGTGTCAGAATGGAGGGATGTGGGCTGAGGAACAAAAACCACAAACAGACGACAAGGATAAAACGTCAGTGGCGGACTGGGAGAAACAGACGGTGTGTTCACTGCTACCATCAAACTCACCGCTGCTGGGAGTCAGTTCAGCTGCCATGTTGGCCATCCTGGCCTGTGCCTCCACTCTTCTAGTGGTGACGGCTCTCTCGCTATCATTGCGAAAGCAAAAACGGGACACTCAGTCTCCTGTGGAAGATGATGAGATCCGGGAGAACATCATCACGTATGACGATGAGGGAGGAGGAGAGGCGGATACAGCCGCTTTCGACATTGCCGCGCTAAAGAGCGCCCCGCAGAGCATGAGGAGGGTACAGCGCCTACAAAACACCAACAACAT

Function

symbol description
cdh24a Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000075960

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043439 False 3489 mRNA 0.51 17 40604951 40744851
TCONS_00043440 True 1931 mRNA 0.55 10 40655306 40731774

Neighbor

gene id symbol gene type direction distance location
XLOC_021937 NA coding upstream 77968 40524394 ~ 40526983 (+)
XLOC_021936 CR354556.3 coding upstream 124369 40477220 ~ 40480582 (+)
XLOC_021935 CR354556.1 coding upstream 132863 40466502 ~ 40472088 (+)
XLOC_021934 soga3b coding upstream 138553 40452157 ~ 40466398 (+)
XLOC_021933 elovl4b coding upstream 166370 40410644 ~ 40438581 (+)
XLOC_021939 CR405692.1 coding downstream 7853 40752704 ~ 40752818 (+)
XLOC_021940 NA coding downstream 69892 40814743 ~ 40815221 (+)
XLOC_021941 NA coding downstream 113349 40858200 ~ 40866526 (+)
XLOC_021942 LO017845.1 coding downstream 163732 40908583 ~ 40938467 (+)
XLOC_021943 reps2 coding downstream 206592 40951443 ~ 40996780 (+)
XLOC_021932 CABZ01067001.1 non-coding upstream 298580 40306244 ~ 40306371 (+)
XLOC_021926 NA non-coding upstream 851987 39752488 ~ 39752964 (+)
XLOC_021944 NA non-coding downstream 260181 41005032 ~ 41019226 (+)
XLOC_021945 CABZ01056843.1 non-coding downstream 276660 41021511 ~ 41155139 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_00001500_00064341 CDH24 coding CI01000001 null 708 ~ 65576 (-)