XLOC_022075 (psmb11b)


Basic Information

Item Value
gene id XLOC_022075
gene name psmb11b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 1140306 ~ 1144425 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043636
TCGACACAGTTACAATTCACTGTATATCCACTCAGTAGTTACATGGCTTTGCAAGATGTATGCGGCCTGCTCGAGCCCCCTCTGTTCCCTCAATGGACTGCTCCACTCTCACAGTCCTTTATGCCGGAGGATTCCACTCATCTGTTCGGAGGGGGGATTTATGGAGAAGCTTTTTCTTCCTGGGTGCCTAGGCGGAGCGGTTTAAACCCTCTTGAGTTTTACATGCCGATATCTGAATATATCACAAAGAGCCCTATAAATTTTGGTCAAACACCTCAAAGCTCGAACCTATTGGATGTTGACCATATGCACCCCACGCTTCCGTACATCTCCCAGTCAGGTGCTCTACCGTTCACTCTTTCCCATGGGACTACGACTCTTGGTTTTGCTTTTCAAGGAGGAGTTATTGCGGCAGCCGACACACGCTCCAGTTGTGCTGGGAAAGTGGCCTGTCCTGCTTCCCCGAAAGTGTTACCTATTCACTCTCACCTGGTGGGCACCACTTCTGGGACATCAGCGGATTGTGCGCTCTGGAAACGGATTCTGGCCAGGGAACTGCGGCTCTATCAGCTCCGACACCGCCGCAGACTATCAACTGGGGGTGCTGCCAAACTCCTGTCCCACATGCTGCACCCATTCAAAGGCACGGAGCTGTGCGTCGCGGCCACTCTGTGTGGGTGGGACGGAGATGAAGACCAAGACAACGAGCAACCAATGACAGAGAGATATGCAAATACTACACTGACAAGCAAAtccagcagccaatcagcagcAAGTTCTGGGTTGTCGGGTGTGCGTGGGCCGCGGGTGGTGTATGTGTGCAGTGATGGGCTTCGTCTGCAGGGGGCGCTGTTCTCTGTGGGCTCCGGGTCCCCGTACGCCTACTCTATCCTCGACGGCGGGGTCCGCTGGGGCATGAGCGCCCAGGAGGCCGCAGCGGTGGCCAGAGAGGCTGTGTATCGGGCCACATACAGAGACGCATACTCTGGGAATAATGTAGATCTGTATCACGTCACTGCTAAAGGCTGGAGGCGCAGAGAGAGGGAGAACCTGAAGGAGGAGTATTACAGAGAGAAGGAGAGGAGAGCGCAGAACAACACAGGAGAGAAATCAATTCATTCAATCAAGTGagatgacagagagagagagtctgagGAGAAAAACAAGGGGCagaatcaatatatatatttacacacatacttttacagttgaagtcagaattatttcgCCCTTTTGTAAACTTTTTCTCAATTTTCCcccaaataatgttgaacagattcaggaaattttccacagtatttccaattatatttgttcttctggggaaagtcgtatttgttttattttggctagaataaaagcagtttttaattgttttaaagccattttaaggtcaatattattagcccccttaagcaatattagttttggattgtctccagaacagaATGGTGTGAACTTTTACTTAAACTAAActgttgttttttactttttcagttttgtttgattaaaataa

Function

symbol description
psmb11b Predicted to enable threonine-type endopeptidase activity. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex.

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-170530-2 Predicted to enable threonine-type endopeptidase activity. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex.

Ensembl:

ensembl_id ENSDARG00000068086

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043636 True 1516 mRNA 0.48 2 1140306 1144425

Neighbor

gene id symbol gene type direction distance location
XLOC_022074 CABZ01079872.1 coding downstream 246 1124514 ~ 1140060 (-)
XLOC_022073 CABZ01079870.1 coding downstream 16335 1118305 ~ 1123971 (-)
XLOC_022072 NA coding downstream 34169 1103195 ~ 1106137 (-)
XLOC_022071 NA coding downstream 60941 1077916 ~ 1079365 (-)
XLOC_022070 si:ch1073-272j17.3 coding downstream 74871 1058116 ~ 1065435 (-)
XLOC_022076 NA coding upstream 32970 1177395 ~ 1179164 (-)
XLOC_022077 CR376840.1 coding upstream 73957 1218382 ~ 1218501 (-)
XLOC_022078 CABZ01078120.1 coding upstream 203381 1347806 ~ 1348933 (-)
XLOC_022079 NA coding upstream 368884 1513309 ~ 1640307 (-)
XLOC_022080 epm2a coding upstream 382283 1526708 ~ 1557195 (-)
XLOC_022068 NA non-coding downstream 106273 1018884 ~ 1034033 (-)
XLOC_022087 NA non-coding upstream 1018965 2163390 ~ 2168177 (-)
XLOC_022088 NA non-coding upstream 1101024 2245449 ~ 2257461 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_06402127_06406030 NA coding CI01000021 null 6401223 ~ 6406030 (-)