G261268


Basic Information

Item Value
gene id G261268
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43895840 ~ 43897118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU297241
CCCAACACCAATAAAGGTGCAATGCAAAAAATGTAGGCATTTATGtctacaaaatatatttattagtcAAGCAACTAAACAGCTAAACCATAATTTAAAggtcagacaggattgtgtcgaggcacagatctagggaagggtacccaaacatttctgcagcattgaaggtttcCCAAGAAtgcagtggtctccatcattcttaaatagaagacatttggaaccatgagagtcttcctagagctggccgcccagccaaactgagcaatcgggggagaagggccttagtcatggaagtgaccaagaacccgatggtcactctgacagagctccagagttcctctgtggagaggggagagccttccagaaggacaaccatctgtgcAGCCCCTCACCaggtggtagagtggccagacggaagccactcctcagtaaaagacacatgacagcccgcttggagtttgccaaacggcaGCCAAAacacactcagaccatgagaaacaagattctctggtctgatgaaaccaagattgaactctttggcctgaatgccagcgtcacgtctggaggaaacctgccaccctatggtgaagcatggtggtggcagcatcatgctgttgggatgtttttcaacagcagggactgggagactagtcaggattgagttaatgatgaacggagcaaagtacaaagagatccttgataaaaatctgctccagagcactcaagacctcagactggggcgaaggacaatggccctaagcattcagccaagacaacgcaggagtgactttgggacaagtctctgaatatccttgagtggtccaaccagaggccggacttgaacctgttcaaacatctctggagagacctgaaaatagctgtgcagcgatgcccCCCATCCAacgtgacagagcttgagaggatctgcagagaagaatgggagaaactccacaaataaaggtgtgccaagcttgtagcatcatacccaagaagactcgaggctgtaacaAAGTACcgtgcttcaacaaggtactgagtaaagactatgaatacgtatgtaaatgtaCTAAATCACCACAATATCTCTGGGAAAGCGAGTGATAAGCTCTGTTTGTATACTATCCATAGgaacaaaaaaaaattgtatgATGAGATCCCTAGGGACGATATTAAATATTTCCTTACTTGAAAATGGTATACAAGGTTTACATGATGTAAATAATGATGATTGTAAAACCGAGGGTATTGTCTTGAAATTGGCCGCATTAAAGAAAGCATC

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU297241 True 1279 lncRNA 0.45 1 43895840 43897118

Neighbor

gene id symbol gene type direction distance location
LOC110519997 lct coding upstream 192 43876264 ~ 43895648 (+)
LOC110519995 LOC106586118 coding upstream 20020 43857089 ~ 43875820 (+)
LOC110519994 LOC100380648 coding upstream 50211 43830961 ~ 43845629 (+)
LOC110519984 LOC106586113 coding upstream 381953 43169785 ~ 43513887 (+)
LOC110519989 LOC106581699 coding upstream 812080 43051602 ~ 43083760 (+)
LOC118956122 NA coding downstream 46006 43943124 ~ 43986958 (+)
LOC110504116 LOC106586120 coding downstream 178704 44075822 ~ 44208107 (+)
LOC110520002 LOC106586124 coding downstream 573053 44470171 ~ 44475272 (+)
LOC118964364 NA coding downstream 937393 44834511 ~ 44834565 (+)
cd18 cd18 coding downstream 981542 44878660 ~ 44903676 (+)
G261217 NA non-coding upstream 52264 43840940 ~ 43843576 (+)
G261215 NA non-coding upstream 65347 43830170 ~ 43830493 (+)
G261213 NA non-coding upstream 66433 43829183 ~ 43829407 (+)
G261212 NA non-coding upstream 66685 43828863 ~ 43829155 (+)
G261207 NA non-coding upstream 68184 43827208 ~ 43827656 (+)
G261269 NA non-coding downstream 229 43897347 ~ 43897554 (+)
G261272 NA non-coding downstream 2549 43899667 ~ 43899875 (+)
G261274 NA non-coding downstream 3790 43900908 ~ 43901187 (+)
G261277 LOC105893191 non-coding downstream 7384 43904502 ~ 43904875 (+)
G261278 NA non-coding downstream 7928 43905046 ~ 43905310 (+)
LOC110519969 LOC106586020 other upstream 3443660 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 4227752 39658753 ~ 39668297 (+)
G254816 NA other upstream 5051284 38843510 ~ 38844556 (+)
G254445 NA other upstream 5294974 38600487 ~ 38600866 (+)
G254204 NA other upstream 5454106 38441166 ~ 38441734 (+)
G261749 NA other downstream 354951 44252069 ~ 44252551 (+)
G262037 NA other downstream 623301 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 1941803 45838921 ~ 45839480 (+)
G263710 NA other downstream 2037001 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 2178366 46075484 ~ 46079425 (+)

Expression


Co-expression Network