G284448 (LOC105357840)


Basic Information

Item Value
gene id G284448
gene name LOC105357840
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63070626 ~ 63071625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU322581
attgtgagcacacaggacggtggcatctttctaaggttttttttattttcccagcaatcagtacaaccacgtcatcgttataaggcatcgccctcttttgcccaccccccccagcaccaggtgtggccactagcctatatgaaggcccaaaattgtgtgttcctttctgctctgacaatggcatgcccatttgtgcgagatgtggtggatgaagaagcacttgtgctgaggagagccttcaggtgagaaagggtcttcagggaccggttggacccactggccttccctgatgaccatctatatgaaagatacaggttttctgcagatggcatcaggtatctatgcagactactgggtcccaggattaagcaccgcactgcacggagccatgcactgagtgtggagcaaatggtttgtgtggccttgcgcttttttgctagtggagccttcctgtactcagtgggggatgcagaacagctgaacaaggccacaatttgccgcacaataaggagtgtgtgtctggctatcaaagcattagcagatgtcttcatctccttccctggccacagaagactctgtgacatcaaagaggagttctataggattgcaggtaagaggatctacaaattacaggacaactgttaacacatagtaggatactcattactttgtgtgacaggtttccccaatgtcattggtgcagtggactgcacacacataaggataaaagccccctcaggtgcccatgaggctgattttgtgaataggaaatcctttcacagcattaatgttcagatggtctgcaatgctgactgtgtgatcagcaatgttgtggcaaaatggcctggctcagtccatgactccagaatctttcgggcctctgaaatctatcagtgcctatcac

Function

NR:

description
PREDICTED: putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322581 True 904 lncRNA 0.48 2 63070626 63071625

Neighbor

gene id symbol gene type direction distance location
LOC110520361 LOC106586409 coding downstream 13893 63028878 ~ 63056733 (-)
LOC110520360 LOC106586512 coding downstream 45345 63011134 ~ 63025281 (-)
LOC110504409 sh3rf3 coding downstream 127108 62869748 ~ 62943518 (-)
LOC110520358 LOC106586406 coding downstream 211631 62855879 ~ 62858995 (-)
LOC110520356 LOC106586509 coding downstream 216712 62841460 ~ 62853914 (-)
chmp2ba chmp2b coding upstream 28449 63100074 ~ 63115360 (-)
LOC118944692 NA coding upstream 92669 63164294 ~ 63167048 (-)
epsti1 epsti1 coding upstream 195493 63267118 ~ 63282972 (-)
LOC110520368 LOC106582175 coding upstream 248223 63319848 ~ 63436412 (-)
LOC110520372 tsc22d1 coding upstream 456218 63527843 ~ 63601105 (-)
G284267 NA non-coding downstream 134491 62933280 ~ 62936135 (-)
G284258 NA non-coding downstream 151381 62918506 ~ 62919245 (-)
G284244 NA non-coding downstream 167486 62902316 ~ 62903140 (-)
G284220 NA non-coding downstream 201165 62868822 ~ 62869461 (-)
G284218 NA non-coding downstream 201886 62866337 ~ 62868740 (-)
G284452 NA non-coding upstream 9729 63081354 ~ 63081556 (-)
G284453 NA non-coding upstream 11404 63083029 ~ 63083228 (-)
G284457 NA non-coding upstream 16326 63087951 ~ 63089637 (-)
G284458 NA non-coding upstream 18178 63089803 ~ 63090207 (-)
G284472 NA non-coding upstream 59647 63131272 ~ 63131493 (-)
G284018 NA other downstream 355449 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 5481443 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 5667051 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 5772864 57270782 ~ 57297762 (-)
G275250 NA other downstream 7659139 55410143 ~ 55411487 (-)
G286522 NA other upstream 1897924 64969549 ~ 64970755 (-)
G286580 marco other upstream 1942634 65014259 ~ 65029736 (-)
G286638 NA other upstream 1983075 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 2163555 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 2226582 65298207 ~ 65300417 (-)

Expression


Co-expression Network