XLOC_022428 (tmem107l)


Basic Information

Item Value
gene id XLOC_022428
gene name tmem107l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28482780 ~ 28487153 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044242
CAACCCGAAGCTTATATCGAGCGATAACTGTCCTCAAGCTTGATAAACTTATACGCATAGTAGCCGTATATACAGTGCTATATCTACTTTACTGCTCACCATTTGAAAAATCAGGTTTTAACAACTAACGCAAAGCTGTGTTCAATGTCGGTGGTCAGCAGTCTGGTGCCTGCCCGTTTCCTCACTCTCATCGCACACCTTGTAATAGTGATAATCATTTTCTGGTCTCGGGAGTACAGTGTCCGAGCCTGTCTACCACTCGACTACACTAATGAAGAGTACACAGCAGAGGACACACGGCTTGTGGTGGCATTATCCGTGACTCTGGGCCTGTTAGCCATCGAGTTGGTTGGGTTTCTCTGTGGAATCTCTATGTTCAACAACAACCAAGCTCTTCTGTCTATTGGATGTCACAGCAGTGGCTCTGTGGCTTTGCTTTTCTTCATGTTTGAGCAATGGACCTGCAGCATTTACTGGTGGATCTTTTCCTTCTGCAGTGTGATTCCAGCATTATATGAGATGGTCATTGTTGTTGTGGTGTTTGGATGTAAGAGAAAGCCTTTGTGAGTGTAGCTGCTTTTTTGCTTTAGGAGAGTTGGATGTTTTCTTTCCATGACCGATGTACCAGAATAGCATTCACTCACTGGCACAATAAACTCCTGTTTTTCCACAACGCTTCTCTGGAGAGTTGCTGAATTGTTATGGGTGAtggcttaaaaggatagtttaaccaaaaataaaaaatactgccaTCATTAACTCACCCTTGTCTCGCTATAAACTTGTTTTAGttctttgaacacaaaagaaaatattttaaagaagattggaaacctgtaatcattgtcAACCATAGTtggttaaacaaatattattgaatTTCATGGTTACAGGTTCATACAGGTTTCGAACAAGTTAGGAtgtgtaaatgatggcagaattgttattttttgggtaaactttctTTTTACAAGTCAAGCTATTGAACTTTTCTAAATACAGATATTTTTATAATGTTGAAAATATGTTGAACCTCTTGTGATGATTAAAGGCATtttgtattt
>TCONS_00044243
ATGTCGGTGGTCAGCAGTCTGGTGCCTGCCCGTTTCCTCACTCTCATCGCACACCTTGTAATAGTGATAATCATTTTCTGGTCTCGGGAGTACAGTGTCCGAGCCTGTCTACCACTCGACTACACTAATGAAGAGTACACAGCAGAGGACACACGGCTTGTGGTGGCATTATCCGTGACTCTGGGCCTGTTAGCCATCGAGTTGGTTGGGTTTCTCTGTGGAATCTCTATGTTCAACAACAACCAAGCTCTTCTGTCTATTGGATGTCACAGCAGTGGCTCTGTGGCTTTGCTTTTCTTCATGTTTGAGCAATGGACCTGCAGCATTTACTGGTGGATCTTTTCCTTCTGCAGTGTGATTCCAGCATTATATGAGATGGTCATTGTTGTTGTGGTGTTTGGATGTAAGAGAAAGCCTTTGTGA

Function

symbol description
tmem107l Predicted to be involved in non-motile cilium assembly and protein localization to ciliary transition zone. Predicted to act upstream of or within cell projection organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Meckel syndrome 13 and orofaciodigital syndrome XVI. Orthologous to human TMEM107 (transmembrane protein 107).

GO:

id name namespace
GO:1905515 non-motile cilium assembly biological_process
GO:1904491 protein localization to ciliary transition zone biological_process
GO:0036038 MKS complex cellular_component
GO:0035869 ciliary transition zone cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-269 Predicted to be involved in non-motile cilium assembly and protein localization to ciliary transition zone. Predicted to act upstream of or within cell projection organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Meckel syndrome 13 and orofaciodigital syndrome XVI. Orthologous to human TMEM107 (transmembrane protein 107).

Ensembl:

ensembl_id ENSDARG00000088398

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044242 False 1064 mRNA 0.39 6 28482780 28487153
TCONS_00044243 True 423 mRNA 0.47 5 28483277 28486893

Neighbor

gene id symbol gene type direction distance location
XLOC_022427 NA coding downstream 29077 28433175 ~ 28453703 (-)
XLOC_022426 c1ql4a coding downstream 59558 28399313 ~ 28423222 (-)
XLOC_022425 neurod4 coding downstream 135741 28343988 ~ 28347039 (-)
XLOC_022424 znf385a coding downstream 188017 28185883 ~ 28294763 (-)
XLOC_022423 tac3a coding downstream 341361 28139489 ~ 28141419 (-)
XLOC_022429 ribc1 coding upstream 198113 28685266 ~ 28692581 (-)
XLOC_022430 dffa coding upstream 315854 28803007 ~ 28808480 (-)
XLOC_022431 casz1 coding upstream 466984 28954137 ~ 29004753 (-)
XLOC_022432 CR677617.1 coding upstream 698699 29185852 ~ 29257716 (-)
XLOC_022433 NA coding upstream 846700 29333853 ~ 29358214 (-)
XLOC_022417 NA non-coding downstream 686857 27788369 ~ 27795923 (-)
XLOC_022416 NA non-coding downstream 710408 27770481 ~ 27772372 (-)
XLOC_022415 NA non-coding downstream 753326 27727295 ~ 27729454 (-)
XLOC_022412 NA non-coding downstream 807386 27652896 ~ 27675394 (-)
XLOC_022440 NA non-coding upstream 1187842 29674995 ~ 29706359 (-)
XLOC_022443 NA non-coding upstream 1334048 29821201 ~ 29822565 (-)
XLOC_022446 FP101914.1 non-coding upstream 1354058 29841211 ~ 29844314 (-)

Expression


Co-expression Network