LOC118964415 (LOC106608050)


Basic Information

Item Value
gene id LOC118964415
gene name LOC106608050
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27537262 ~ 27601564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975467.1
ATGAGCATGGAGGAGGACAACAAATACACGTCCAAACTGTCGCCCACTGTGGACCACTGGGCAGGCATGTACCTAGTGGTGATAGcgGTGCTGTCGGTCCTGGGTAATGCTGCGGTCTTAGTGACCTCAGCACTCCGGCCAACTCACCTCAAGGCCCCGGAGCTCCTTACAGTCAACCTGGCGGTGACAGACATAGGCATGGCTCTCAGCATGTACCCCCTGTCCATCGCCTCACTCTTCAACCACGCCTGGATTGGAGGGGACTTCTCCTGCCTGTACTATGGCCTGATGGGGATGATCTTCAGCACGGCCAGCATCATGACCCTGGCTGTCATGGGTCTGGTACGATACCTGGTGACAGGAAACCCACCAAGAACAGGCAACAAGTTCCAGCGTCGGACCATCACCATGGTGATCAGTTTGATCTGGCTGTACTCTGGGCTGTGGGCTGTGTTTCCTCTCTTGGGCTGGGGCGGCTACGGACCGGAGCCCTTCGGAGTGGCCTGCTCCGTGGACTGGGCAAGCTACCAAGACTCCCTGAACCACTCTACCTTCatcatgtctctgtctatcttctGTACCTTCATCCCCTGCCTCGTCATCCTCTTCTCCTATTCCGGCATAGCCTGGAAACTCCACAAGGCATACCAGTCCATCCAGAATGGAAACTTCAACTACGGACACATCGAGAGGAAAGTCACTCTGatgGCGGTGTTGATCAGCTCAGGGTTCATCGTGGCTTGGTCTCCCTACGTGGTGCTCAGCTTTTGGTATATGTTCCAGGGGAAGGCCAGTCTGGCCCCGCTGGTCTCCCTGCTGCCCTGCCTGTTCGCTAAGGGCTCCACGGCCTACAACCCTTTTATCTACTACATCTTCAGACGCTCCTTTAGACGCCAGCTCATCCAGCTCCGGGGGCTGATCTGCTGCTCTGCCCAGCCAGACACACCTTCGAGTGGGGAGACGGGAGAGGAGGGCAGACAGACTTTGAGGTCTGACCTACGACAGAGTCTCCCGGAAGAGAAGAGTGGAGCTCCTCTGGTAGGGGAGTTGGGAACTGCGGCGCTGGAGATACAGTCTGAGAATGAGTTGACAAGCTCCTgttaa
>TU381324
TCATCCCCTGCCTCGTCATCCTCTTCTCCTATTCCGGCATAGCCTGGAAACTCCACAAGGCATACCAGTCCATCCAGAATGGAAACTTCAACTACGGACACATCGAGAGGAAAGTCACTCTGatgGCGGTGTTGATCAGCTCAGGGTTCATCGTGGCTTGGTCTCCCTACGTGGTGCTCAGCTTTTGGTATATGTTCCAGGGGAAGGCCAGTCTGGCCCCGCTGGTCTCCCTGCTGCCCTGCCTGTTCGCTAAGGGCTCCACGGCCTACAACCCTTTTATCTACTACATCTTCAGACGCTCCTTTAGACGCCAGCTCATCCAGCTCCGGGGGCTGATCTGCTGCTCTGCCCAGCCAGACACACCTTCGAGTGGGGAGACGGGAGAGGAGGGCAGACAGACTTTGAGGTCTGACCTACGACAGAGTCTCCCGGAAGAGAAGAGTGGAGCTCCTCTGGTAGGGGAGTTGGGAACTGCGGCGCTGGAGATACAGTCTGAGAATGAGTTGACAAGCT

Function

NR:

description
PREDICTED: opsin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975467.1 False 1104 mRNA 0.56 4 27537262 27601564
TU381324 True 513 TUCP 0.56 2 27590852 27601556

Neighbor

gene id symbol gene type direction distance location
LOC110522432 otof coding upstream 12874 27402097 ~ 27524388 (+)
tcp1 tcp1 coding upstream 341911 27186465 ~ 27195351 (+)
LOC110522355 plekhg1 coding upstream 351813 27054628 ~ 27185449 (+)
LOC110522356 ostm1 coding upstream 532643 26998492 ~ 27004619 (+)
snx3 snx3 coding upstream 575414 26935835 ~ 26961848 (+)
opn8b LOC106608041 coding downstream 23136 27624700 ~ 27664419 (+)
LOC110522435 wdcp coding downstream 155869 27757433 ~ 27764552 (+)
LOC110522440 atad2b coding downstream 199359 27800923 ~ 27962367 (+)
LOC118964460 NA coding downstream 269579 27871143 ~ 27872978 (+)
LOC110522445 LOC106608054 coding downstream 956636 28558200 ~ 28567300 (+)
G336777 NA non-coding upstream 82925 27451518 ~ 27454337 (+)
G336742 NA non-coding upstream 100211 27395375 ~ 27437051 (+)
G336723 NA non-coding upstream 166208 27327879 ~ 27371054 (+)
G336724 NA non-coding upstream 196263 27334124 ~ 27340999 (+)
G336727 NA non-coding upstream 197251 27336318 ~ 27340011 (+)
G338328 NA non-coding downstream 167 27601731 ~ 27602437 (+)
G338358 NA non-coding downstream 21811 27623375 ~ 27623670 (+)
G338363 NA non-coding downstream 23979 27625543 ~ 27625857 (+)
G338379 NA non-coding downstream 38921 27640485 ~ 27640826 (+)
G338383 NA non-coding downstream 46483 27648047 ~ 27648268 (+)
G336464 NA other upstream 642425 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 1479571 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 3114531 24420114 ~ 24422731 (+)
G334475 NA other upstream 3118316 24417582 ~ 24418946 (+)
G339660 NA other downstream 1257152 28858716 ~ 28859155 (+)
G339693 NA other downstream 1313035 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1564954 29166518 ~ 29166996 (+)
G339928 NA other downstream 1733805 29335369 ~ 29336939 (+)
G342538 NA other downstream 3780262 31381826 ~ 31382749 (+)

Expression


Co-expression Network