LOC118964460


Basic Information

Item Value
gene id LOC118964460
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27871143 ~ 27872978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051509.1
GCCCCGCTGTGTTCATATTAAGAACTCTGACAGGAGAATATGGAGAAGAGTTCACCCACTGTACCTTCCCCTAATCCATTATTCACTCATCTGTTTCCATTTATACGCCTCCTGTTTCTAGCAACTATGTGTGTTGACTGTCTTTGACTTGGGCAAACTTGGGACTATTTATGCATGTACCTTGTAAATCCTGCATGCTCATGTTAACACCATTCGCTGTAGGTCTGCTGCTCAGTTATACTCCCAATATAGTGTTCTTGTAAAATGTCTTGCATTAGCTCTAGGGTTATATTTACAGAGCTTTGCAAGTTGTTAGCTTTTCATTCAGCTTTAAGTTGACTTGCAATGTTAAATGGAAACCCCATGAACCCCAGTTGATGGGGTTGCCATGTCATCATACTTTCAAAGGGAATGTTATTCTATCGATTTTCCCCTCACTTCGAAGAGGAAGGCATCCCATCAGCCAACATCAGCGCTGCAAGACAATATGAGTCCGATCCCATCATCTGCAGAGGCATCAACATCAAGCTCAGCACCAGGAACTAGTaggAACCTGGTTTATTTTATGGTTACACATCCTCATGACCTACCTCCATGACTTTCCAGGAGACCTGCAGTACAAACAAATCTTCTGCAATAGGTCGAAGCAGTGAGTGGTAAAGAAAGTGTATGAGGCTTGTTCACCTGGCTGTGGATTGCAGGAAAGACCAGAGAGTTTTCAACAAGGAGCCAGAGTTGCAGCCCCCCCAAACTCAACATCGCCACAGCGCCAAAGCCTGCTATTACCCAACACAAGAAGAAGTTCACCAGCTGAAAAACATTCAGGAACATGCTTGGAACGTTCAATCAACACAACATCCGTATTCAGTTAGACTGATGTTGTAGTATGGTCACAACTGCATTGTGGTGTATATATTGCTAGCTGCATATAAGTGTTTTGTATAATATATTTTACAAGCGACCAAGTGATTCCAGCAGCATCAAAAACCAATAAACTGTTGACTTCAACTT

Function

NR:

description
ATPase family AAA domain-containing protein 2B isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051509.1 True 1011 mRNA 0.43 3 27871143 27872978

Neighbor

gene id symbol gene type direction distance location
LOC110522435 wdcp coding upstream 106591 27757433 ~ 27764552 (+)
opn8b LOC106608041 coding upstream 206724 27624700 ~ 27664419 (+)
LOC118964415 LOC106608050 coding upstream 269579 27537262 ~ 27601564 (+)
LOC110522432 otof coding upstream 346755 27402097 ~ 27524388 (+)
tcp1 tcp1 coding upstream 675792 27186465 ~ 27195351 (+)
LOC110522445 LOC106608054 coding downstream 685222 28558200 ~ 28567300 (+)
LOC110522446 bmp2 coding downstream 757026 28630004 ~ 28636513 (+)
LOC110521072 plcb1 coding downstream 826089 28699067 ~ 28934753 (+)
LOC110522448 plcb4 coding downstream 1085106 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 1280496 29153474 ~ 29163882 (+)
G338533 NA non-coding upstream 4689 27866227 ~ 27866454 (+)
G338524 NA non-coding upstream 24718 27846122 ~ 27846425 (+)
G338517 NA non-coding upstream 38189 27832724 ~ 27832954 (+)
G338515 NA non-coding upstream 46453 27824468 ~ 27824690 (+)
G338514 NA non-coding upstream 57074 27813791 ~ 27814069 (+)
G338537 NA non-coding downstream 10922 27883900 ~ 27884309 (+)
G338555 NA non-coding downstream 52802 27925780 ~ 27925994 (+)
G338567 NA non-coding downstream 80068 27953046 ~ 27953546 (+)
G338568 NA non-coding downstream 80710 27953688 ~ 27953987 (+)
G338569 NA non-coding downstream 81181 27954159 ~ 27954413 (+)
LOC110522355 plekhg1 other upstream 686173 27054628 ~ 27185449 (+)
G336464 NA other upstream 976306 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 1813452 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 3448412 24420114 ~ 24422731 (+)
G339660 NA other downstream 985738 28858716 ~ 28859155 (+)
G339693 NA other downstream 1041621 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1293540 29166518 ~ 29166996 (+)
G339928 NA other downstream 1462391 29335369 ~ 29336939 (+)
G342538 NA other downstream 3508848 31381826 ~ 31382749 (+)

Expression


Co-expression Network