XLOC_022456 (pcmtd2a)


Basic Information

Item Value
gene id XLOC_022456
gene name pcmtd2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30755804 ~ 30764319 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044287
TGACGTCACAGAGTCAGCTGGCCAATGTTTACATCCAGCGCTGCTCTGCGTGAACGTTTATGAGGAGAAACCGAGACAGAGAAATAACGGGAGATAGTTAACCGACTAGACAGCGTTCACAGACCGTAACCAGGGTGTTGTTTTGGGGGTGCCAGACAATTCGGCTCGGTCGAGTGTGAAGTCGTCGGGGTGTTTCCCGTGACGGGTTTCTCCCCAAAAACACATCCATCCCCACATTTCTTCCGTCTTTGTCTTCATTTCAGACTACTTTTCGCAGCTAAAATGGGGGGCGCAGTCAGTGCTGGAGAGGACAATGATGAGTTGATAGACAACCTGAAAGAGGCCCAGTACATCCGCTCAAATCTGGTAGAGCATGCCTTCAGGGCCATCGATCGTGCGGACTACTATCTGGAAGAGTTTCGTGACAGCGCCTACAAGGATCTGGCCTGGAGACACGGCAACATCCACCTCTCTGCGCCCTGCATCTACTCTGAGGTGATGGAGGCTCTGGATCTGCAGCCGGGCCTGTCCTTTCTCAACCTGGGCAGCGGCACAGGCTACCTCAGCACCATGGTGGGACTTATACTGGGGCCATTTGGTGTGAATCATGGTGTTGAATTGCATGAAGATGTTATAGAGTATGCGTATCAGAAGCTGGACTTCTTCATCAAGACCAATGATAGTTTTGACAGGTTTGATTTCTGCGAGCCCTCCTTCGTGGTGGGCAACTGTCTGGAGATTGCGCCAGAAAGCAGACAGTATGACAGGGTTTACTGTGGCGCAGGAGTCCAGAGGGAACACGAAGACTACATGAAGAAGCTGCTTAAGATTGGAGGAATCCTAGTACTGCCACTGGAAGAAAAGCTTACTAAAATTACTCGGACAGGATATAACACATGGGAAACGAGAAAGATAATCGCTGTATCCTTCGCACCACTTGTGCTCCCAAAACACAGGGAAAATGGCAAACCCAGAGCAGTCTCTCTACctgcCATGTTCGAGGTGCGGAGTCTTCAAGATTTGTCCCGCATCAACATCCGTCACATTCTAAAGAAATACGGATCCGGATCCTTGCCACAACCTCGGAGAACTGGTCTAAAGCGAAGAAGTCATCGCTCTCAGAAACGCGAGCACCGCGACACCCCTCTCCTGACCAACAGTTATCTGTTCATGAGCCGCTTGATTCCAGGACCAatggacaacaacaacaaccagtcCTCCACAGACaatgaggatgaagatgaagaccTCCGGAGGGTCTGTGAACTAGAGGAGAAAGAAGAAAACGAGAGGAGGAAAGAGGGCAGCGTTTTGGTGATGGACACCCCAGTAAACCTCCTAAGGGAGAGGATCCTCGGTCTGCCTTTGCCAGAGCCTCTTAAGATGTATCTCCTCTACTACAGAGAGAAGTAAACCTCCTTTTCCAAATCGATAGCCTA

Function

symbol description
pcmtd2a Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Orthologous to human PCMTD2 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2).

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-14 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Orthologous to human PCMTD2 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2).

Ensembl:

ensembl_id ENSDARG00000053820

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044287 True 1439 mRNA 0.50 6 30755804 30764319

Neighbor

gene id symbol gene type direction distance location
XLOC_022455 thap3 coding downstream 28208 30725716 ~ 30727596 (-)
XLOC_022453 CR456642.2 coding downstream 57117 30517199 ~ 30698687 (-)
XLOC_022454 CR456642.1 coding downstream 147703 30607983 ~ 30608101 (-)
XLOC_022452 camta1a coding downstream 324471 30061364 ~ 30431333 (-)
XLOC_022451 NA coding downstream 696628 30054434 ~ 30059176 (-)
XLOC_022457 myt1a coding upstream 2991 30767310 ~ 30787932 (-)
XLOC_022458 NA coding upstream 142105 30906424 ~ 30921011 (-)
XLOC_022459 osbpl2a coding upstream 173438 30937757 ~ 30960506 (-)
XLOC_022460 si:ch211-197l9.5 coding upstream 276739 31041058 ~ 31060350 (-)
XLOC_022461 NA coding upstream 488981 31253300 ~ 31266621 (-)
XLOC_022449 NA non-coding downstream 744985 30009263 ~ 30010819 (-)
XLOC_022448 CU695073.1 non-coding downstream 854569 29900651 ~ 29901235 (-)
XLOC_022466 NA non-coding upstream 656492 31420811 ~ 31423522 (-)
XLOC_022472 BX927365.1 non-coding upstream 929049 31693368 ~ 31717710 (-)
XLOC_022474 BX927365.2 non-coding upstream 990433 31754752 ~ 31754868 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_12517063_12519435 PCMTD2 coding CI01000001 null 12516115 ~ 12519435 (-)