XLOC_022643


Basic Information

Item Value
gene id XLOC_022643
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43928498 ~ 43930231 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045139
ATGCCAGCCAATCAgccttttagtttattttaattgccACAAATTAGGTTTGCGATACATCTCAGAGCACAAGTCTTTTATTTTTCAAGTTACacaaacacacacaaaacaatcatacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacagacacacacacagacacacacacacacacacacacacacacacacaaaaacagttaaacaaactaacacatacaaacacacacacagacacacagatacacacacacccacacacaaaaaacataacacatccacacacaaacaaacaaacacagacagataaacaaacacacacacacacacacacacacacacacaaacacaaacagtcaaaaaaacacatacacaaacacaccccccacacaaacacacaaataataaacacacacaagcaagcaCAGATTGATaaacaatcaaacacacaaacacacacacacacacatacacaaacacacacacacagattttgtGTTcaggaagaaagaaactcaaaatgtttacaaCTACTTCAGGGAGAGTGCACACATTTCTGGAGGTGTGTAAGAAGtaaagtgtgtgtaaatgatgacaggatgttcagttttgtgtgaaccgCCCCTTTAAAGGAGGAAAACCCTCAAAATGAGAGATTTAGTTCgtaaaataagaaaaacatcGGCCATATTGAGGACACTGCAGACGTTCACGTTTGTCTAGCGGGGGTGTGTTTAGTGACCAGCGCTCTCACTGTCCGTCACCTCATTGGTCAATTTCAGCAGATAGAACGCTGCTACAGCCAATAGAACACCACAGAAGGGCAACAGGAGGCGGAGCTTATATCTGTGCCACACC

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009058 biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process biological_process
GO:0015015 heparan sulfate proteoglycan biosynthetic process, enzymatic modification biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035032 phosphatidylinositol 3-kinase complex, class III cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0004394 heparan sulfate 2-O-sulfotransferase activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045139 True 890 lncRNA 0.41 3 43928498 43930231

Neighbor

gene id symbol gene type direction distance location
XLOC_022642 NA coding downstream 43694 43883869 ~ 43884804 (-)
XLOC_022641 abce1 coding downstream 210431 43695036 ~ 43718067 (-)
XLOC_022640 NA coding downstream 259655 43665412 ~ 43668843 (-)
XLOC_022639 CABZ01117603.1 coding downstream 318903 43597961 ~ 43609595 (-)
XLOC_022638 itchb coding downstream 332542 43535224 ~ 43595956 (-)
XLOC_022644 NA coding upstream 59008 43989239 ~ 43992522 (-)
XLOC_022645 CABZ01071875.1 coding upstream 80194 44010425 ~ 44010541 (-)
XLOC_022646 CABZ01071874.1 coding upstream 83451 44013682 ~ 44017082 (-)
XLOC_022647 zgc:158659 coding upstream 260621 44190852 ~ 44233410 (-)
XLOC_022648 SPSB2 coding upstream 535292 44465523 ~ 44470253 (-)
XLOC_022637 CABZ01117597.1 non-coding downstream 397783 43530601 ~ 43530715 (-)
XLOC_022632 CR545469.1 non-coding downstream 639047 43244091 ~ 43289451 (-)
XLOC_022631 BX004770.1 non-coding downstream 802552 43021194 ~ 43125946 (-)
XLOC_022650 NA non-coding upstream 584968 44515199 ~ 44521974 (-)
XLOC_022652 NA non-coding upstream 622834 44553065 ~ 44565769 (-)

Expression


Co-expression Network