RNA id: TCONS_00045139


Basic Information

Item Value
RNA id TCONS_00045139
length 890
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id XLOC_022643
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43928498 ~ 43930231 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCAGCCAATCAgccttttagtttattttaattgccACAAATTAGGTTTGCGATACATCTCAGAGCACAAGTCTTTTATTTTTCAAGTTACacaaacacacacaaaacaatcatacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacagacacacacacagacacacacacacacacacacacacacacacacaaaaacagttaaacaaactaacacatacaaacacacacacagacacacagatacacacacacccacacacaaaaaacataacacatccacacacaaacaaacaaacacagacagataaacaaacacacacacacacacacacacacacacacaaacacaaacagtcaaaaaaacacatacacaaacacaccccccacacaaacacacaaataataaacacacacaagcaagcaCAGATTGATaaacaatcaaacacacaaacacacacacacacacatacacaaacacacacacacagattttgtGTTcaggaagaaagaaactcaaaatgtttacaaCTACTTCAGGGAGAGTGCACACATTTCTGGAGGTGTGTAAGAAGtaaagtgtgtgtaaatgatgacaggatgttcagttttgtgtgaaccgCCCCTTTAAAGGAGGAAAACCCTCAAAATGAGAGATTTAGTTCgtaaaataagaaaaacatcGGCCATATTGAGGACACTGCAGACGTTCACGTTTGTCTAGCGGGGGTGTGTTTAGTGACCAGCGCTCTCACTGTCCGTCACCTCATTGGTCAATTTCAGCAGATAGAACGCTGCTACAGCCAATAGAACACCACAGAAGGGCAACAGGAGGCGGAGCTTATATCTGTGCCACACC

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009058 biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process biological_process
GO:0015015 heparan sulfate proteoglycan biosynthetic process, enzymatic modification biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035032 phosphatidylinositol 3-kinase complex, class III cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0004394 heparan sulfate 2-O-sulfotransferase activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044759 lncRNA downstream 43694 43883869 ~ 43884804 (-) True XLOC_022642
TCONS_00044758 lncRNA downstream 259655 43665412 ~ 43668843 (-) True XLOC_022640
TCONS_00045136 lncRNA downstream 639047 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00045140 lncRNA upstream 59008 43989239 ~ 43991737 (-) False XLOC_022644
TCONS_00045144 lncRNA upstream 59008 43989239 ~ 43992456 (-) False XLOC_022644
TCONS_00045145 lncRNA upstream 59008 43989239 ~ 43992456 (-) False XLOC_022644
TCONS_00045143 lncRNA upstream 59008 43989239 ~ 43992456 (-) False XLOC_022644
TCONS_00045142 lncRNA upstream 59008 43989239 ~ 43992456 (-) False XLOC_022644
TCONS_00044577 mRNA downstream 210431 43695822 ~ 43718067 (-) True XLOC_022641
TCONS_00044576 mRNA downstream 214741 43695036 ~ 43713757 (-) False XLOC_022641
TCONS_00044575 mRNA downstream 318903 43597961 ~ 43609595 (-) True XLOC_022639
TCONS_00044574 mRNA downstream 332542 43535224 ~ 43595956 (-) True XLOC_022638
TCONS_00044572 mRNA downstream 441784 43467799 ~ 43486714 (-) True XLOC_022636
TCONS_00044581 mRNA upstream 260621 44190852 ~ 44226556 (-) False XLOC_022647
TCONS_00044582 mRNA upstream 260622 44190853 ~ 44207349 (-) False XLOC_022647
TCONS_00044583 mRNA upstream 276656 44206887 ~ 44233410 (-) False XLOC_022647
TCONS_00044584 mRNA upstream 280675 44210906 ~ 44219902 (-) False XLOC_022647
TCONS_00044585 mRNA upstream 285727 44215958 ~ 44233408 (-) True XLOC_022647
TCONS_00044573 other downstream 397783 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044564 other downstream 802552 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044558 other downstream 1052013 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044554 other downstream 1413496 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044552 other downstream 1524818 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044578 other upstream 80194 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044606 other upstream 893852 44824083 ~ 44838825 (-) False XLOC_022660
TCONS_00044607 other upstream 896326 44826557 ~ 44829277 (-) True XLOC_022660
TCONS_00044611 other upstream 931621 44861852 ~ 44871940 (-) False XLOC_022661
TCONS_00044612 other upstream 931660 44861891 ~ 44879214 (-) True XLOC_022661

Expression Profile

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