RNA id: TCONS_00044758


Basic Information

Item Value
RNA id TCONS_00044758
length 434
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_022640
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43665412 ~ 43668843 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTTGCAGATCACGCCTGACCTGAACGCTACATCCACGAGTCCAGGGCTGGATGCTTTAATCCAGGTGATCAGGAGTCAGCAAAAGCAGGTAAATATCAGTGCTTTTTCCCAGGCATGATCATGGCACAGTGCAGAACATAAAAGGAACTGAGTGGATTTAATGGGGAGACGCTGGGAGATGTAGGCGAAAAAGAAAGTGAAACTACACGCCCCATACTGCAACAACTTGGAGCAGAACTGAAACAGAAAGAGGATGTAGTAGTTCCTGGATCAGCAGCTGTTGCACATCCTGGGAGAGAGAATAGAGGACATCAGGATAAAAGAAAAACAGGAttagagaaggagagagagagagagtgtgtgagagagagagagcaatgatACTCCAGCAGGCAAACTCCAGGGTCAGTTTGTGTTGCGCtaacaaaaagg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045137 lncRNA downstream 375961 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00045136 lncRNA downstream 375961 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00045135 lncRNA downstream 375961 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00045134 lncRNA downstream 375961 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00045138 lncRNA downstream 375961 43270478 ~ 43289451 (-) True XLOC_022632
TCONS_00044759 lncRNA upstream 215026 43883869 ~ 43884804 (-) True XLOC_022642
TCONS_00045139 lncRNA upstream 259655 43928498 ~ 43930231 (-) True XLOC_022643
TCONS_00045140 lncRNA upstream 320396 43989239 ~ 43991737 (-) False XLOC_022644
TCONS_00045144 lncRNA upstream 320396 43989239 ~ 43992456 (-) False XLOC_022644
TCONS_00045145 lncRNA upstream 320396 43989239 ~ 43992456 (-) False XLOC_022644
TCONS_00044575 mRNA downstream 55817 43597961 ~ 43609595 (-) True XLOC_022639
TCONS_00044574 mRNA downstream 69456 43535224 ~ 43595956 (-) True XLOC_022638
TCONS_00044572 mRNA downstream 178698 43467799 ~ 43486714 (-) True XLOC_022636
TCONS_00044569 mRNA downstream 210889 43405205 ~ 43454523 (-) False XLOC_022635
TCONS_00044571 mRNA downstream 211437 43410413 ~ 43453975 (-) True XLOC_022635
TCONS_00044576 mRNA upstream 26193 43695036 ~ 43713757 (-) False XLOC_022641
TCONS_00044577 mRNA upstream 26979 43695822 ~ 43718067 (-) True XLOC_022641
TCONS_00044581 mRNA upstream 522009 44190852 ~ 44226556 (-) False XLOC_022647
TCONS_00044582 mRNA upstream 522010 44190853 ~ 44207349 (-) False XLOC_022647
TCONS_00044583 mRNA upstream 538044 44206887 ~ 44233410 (-) False XLOC_022647
TCONS_00044573 other downstream 134697 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044564 other downstream 539466 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044558 other downstream 788927 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044554 other downstream 1150410 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044552 other downstream 1261732 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044578 other upstream 341582 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044606 other upstream 1155240 44824083 ~ 44838825 (-) False XLOC_022660
TCONS_00044607 other upstream 1157714 44826557 ~ 44829277 (-) True XLOC_022660
TCONS_00044611 other upstream 1193009 44861852 ~ 44871940 (-) False XLOC_022661
TCONS_00044612 other upstream 1193048 44861891 ~ 44879214 (-) True XLOC_022661

Expression Profile

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