Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00044611 |
| length | 836 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.51 |
| exon number | 7 |
| gene id | XLOC_022661 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 44843860 ~ 44879214 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0017185 | peptidyl-lysine hydroxylation | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0008045 | motor neuron axon guidance | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005581 | collagen trimer | cellular_component |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0008475 | procollagen-lysine 5-dioxygenase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0051213 | dioxygenase activity | molecular_function |
| GO:0033823 | procollagen glucosyltransferase activity | molecular_function |
| GO:0031418 | L-ascorbic acid binding | molecular_function |
| id | description |
|---|---|
| ko00310 | Lysine degradation |
| ko00514 | Other types of O-glycan biosynthesis |
| ko01003 | Glycosyltransferases |
| id | description |
|---|---|
| ZDB-GENE-021031-4 | Predicted to enable procollagen glucosyltransferase activity and procollagen-lysine 5-dioxygenase activity. Acts upstream of or within motor neuron axon guidance and neural crest cell migration. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of collagen trimer. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; chordo neural hinge; mesoderm; pectoral fin; and splanchnocranium. Orthologous to human PLOD3 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 3). |
| ensembl_id | ENSDART00000149181 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044610 | lncRNA | downstream | 2709 | 44850143 ~ 44859143 (-) | False | XLOC_022661 |
| TCONS_00045172 | lncRNA | downstream | 23013 | 44824083 ~ 44838839 (-) | False | XLOC_022660 |
| TCONS_00044603 | lncRNA | downstream | 67404 | 44787967 ~ 44794448 (-) | True | XLOC_022658 |
| TCONS_00045171 | lncRNA | downstream | 67566 | 44787967 ~ 44794286 (-) | False | XLOC_022658 |
| TCONS_00044604 | lncRNA | downstream | 67695 | 44787967 ~ 44794157 (-) | False | XLOC_022658 |
| TCONS_00044615 | lncRNA | upstream | 32963 | 44904903 ~ 44905923 (-) | True | XLOC_022663 |
| TCONS_00045173 | lncRNA | upstream | 160526 | 45032466 ~ 45035485 (-) | True | XLOC_022666 |
| TCONS_00044760 | lncRNA | upstream | 256159 | 45128099 ~ 45134816 (-) | False | XLOC_022669 |
| TCONS_00044761 | lncRNA | upstream | 262276 | 45134216 ~ 45136219 (-) | False | XLOC_022669 |
| TCONS_00044762 | lncRNA | upstream | 263765 | 45135705 ~ 45136632 (-) | True | XLOC_022669 |
| TCONS_00044609 | mRNA | downstream | 12891 | 44844717 ~ 44848961 (-) | False | XLOC_022661 |
| TCONS_00044605 | mRNA | downstream | 42752 | 44797665 ~ 44819100 (-) | True | XLOC_022659 |
| TCONS_00044601 | mRNA | downstream | 75008 | 44772661 ~ 44786844 (-) | True | XLOC_022657 |
| TCONS_00044600 | mRNA | downstream | 138750 | 44712588 ~ 44723102 (-) | True | XLOC_022656 |
| TCONS_00044599 | mRNA | downstream | 184537 | 44667616 ~ 44677315 (-) | True | XLOC_022655 |
| TCONS_00044613 | mRNA | upstream | 29458 | 44901398 ~ 44903048 (-) | True | XLOC_022662 |
| TCONS_00044614 | mRNA | upstream | 31364 | 44903304 ~ 44916800 (-) | False | XLOC_022663 |
| TCONS_00044616 | mRNA | upstream | 68760 | 44940700 ~ 44965582 (-) | True | XLOC_022664 |
| TCONS_00044617 | mRNA | upstream | 98274 | 44970214 ~ 45022681 (-) | True | XLOC_022665 |
| TCONS_00044618 | mRNA | upstream | 171361 | 45043301 ~ 45049044 (-) | True | XLOC_022667 |
| TCONS_00044606 | other | downstream | 23027 | 44824083 ~ 44838825 (-) | False | XLOC_022660 |
| TCONS_00044607 | other | downstream | 32575 | 44826557 ~ 44829277 (-) | True | XLOC_022660 |
| TCONS_00044578 | other | downstream | 851311 | 44010425 ~ 44010541 (-) | True | XLOC_022645 |
| TCONS_00044573 | other | downstream | 1331137 | 43530601 ~ 43530715 (-) | True | XLOC_022637 |
| TCONS_00044564 | other | downstream | 1735906 | 43021194 ~ 43125946 (-) | True | XLOC_022631 |
| TCONS_00044628 | other | upstream | 530337 | 45402277 ~ 45407642 (-) | False | XLOC_022672 |
| TCONS_00044630 | other | upstream | 530500 | 45402440 ~ 45407662 (-) | True | XLOC_022672 |
| TCONS_00044637 | other | upstream | 694736 | 45566676 ~ 45597854 (-) | True | XLOC_022678 |
