RNA id: TCONS_00044761


Basic Information

Item Value
RNA id TCONS_00044761
length 596
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_022669
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 45128099 ~ 45136632 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ataattactactattattgtgtgtctgtgtgttttttgtgtgtctgtgttcatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtctgcAGGTTGTGAGCTGCACACACTCAGGTTGTCGCTGTGAGCGTTTCCTGCCGGGACGAAGAAACATCAGGTCATGTGATCACTGCGCTCATGGGTGGGTCGATCACGcgctCAGTAAGGTGTGTGTCCCGCAGGTGTGTTCAGCACAGGTGGAGATCGTGCAGTGTAGTGTGGTGTTCGACATCAGCAGTCTGATCCTTTACGGCACACACTCTCTGCCCGTGCGCATGAAGATCCTGCTGGACCGACTGTTCAGcgtcctcacacacacacaggtgctcAACATCATACACACGCTCGGCTGGACACTCAGAGACTACGTCAGAGGATACAtgctgcaggtacacacacacacacacacaaacaaaacacacatacacaaaaacacatgcatgtacacctaaacaaacaaatgcacacatgcatgtaagcacaaacacacacacttaaataaatgcacatatactgtacacacacacacatgcac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045173 lncRNA downstream 98731 45032466 ~ 45035485 (-) True XLOC_022666
TCONS_00044615 lncRNA downstream 228293 44904903 ~ 44905923 (-) True XLOC_022663
TCONS_00044610 lncRNA downstream 275073 44850143 ~ 44859143 (-) False XLOC_022661
TCONS_00045172 lncRNA downstream 295377 44824083 ~ 44838839 (-) False XLOC_022660
TCONS_00044603 lncRNA downstream 339768 44787967 ~ 44794448 (-) True XLOC_022658
TCONS_00045174 lncRNA upstream 18824 45155043 ~ 45199938 (-) False XLOC_022670
TCONS_00045175 lncRNA upstream 698037 45834256 ~ 45841432 (-) False XLOC_022681
TCONS_00045176 lncRNA upstream 698037 45834256 ~ 45841579 (-) True XLOC_022681
TCONS_00045177 lncRNA upstream 907353 46043572 ~ 46047869 (-) True XLOC_022687
TCONS_00045178 lncRNA upstream 1038785 46175004 ~ 46175766 (-) True XLOC_022689
TCONS_00044619 mRNA downstream 14411 45077358 ~ 45119805 (-) False XLOC_022668
TCONS_00044620 mRNA downstream 22579 45100060 ~ 45111637 (-) True XLOC_022668
TCONS_00044618 mRNA downstream 85172 45043301 ~ 45049044 (-) True XLOC_022667
TCONS_00044617 mRNA downstream 111535 44970214 ~ 45022681 (-) True XLOC_022665
TCONS_00044616 mRNA downstream 168634 44940700 ~ 44965582 (-) True XLOC_022664
TCONS_00044621 mRNA upstream 18937 45155156 ~ 45318760 (-) False XLOC_022670
TCONS_00044622 mRNA upstream 30842 45167061 ~ 45319592 (-) False XLOC_022670
TCONS_00044623 mRNA upstream 168611 45304830 ~ 45398622 (-) False XLOC_022671
TCONS_00044624 mRNA upstream 171507 45307726 ~ 45339439 (-) True XLOC_022670
TCONS_00044625 mRNA upstream 248294 45384513 ~ 45398655 (-) True XLOC_022671
TCONS_00044612 other downstream 255002 44861891 ~ 44879214 (-) True XLOC_022661
TCONS_00044611 other downstream 262276 44861852 ~ 44871940 (-) False XLOC_022661
TCONS_00044606 other downstream 295391 44824083 ~ 44838825 (-) False XLOC_022660
TCONS_00044607 other downstream 304939 44826557 ~ 44829277 (-) True XLOC_022660
TCONS_00044578 other downstream 1123675 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044628 other upstream 266058 45402277 ~ 45407642 (-) False XLOC_022672
TCONS_00044630 other upstream 266221 45402440 ~ 45407662 (-) True XLOC_022672
TCONS_00044637 other upstream 430457 45566676 ~ 45597854 (-) True XLOC_022678

Expression Profile

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