XLOC_022672 (aimp1b)


Basic Information

Item Value
gene id XLOC_022672
gene name aimp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 45402128 ~ 45407724 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044626
cagATGTCTAAAGACAAGCCTCCCACATCCAGAGCAGATCCTCCACAGCAGGAGCAGATGATGGAGTATTTCACACAACAGATCCTGTTCCTGAAGGAGAAAGCCAtgctGCAGGCGTCAGTGAGGGAGGAGAAGAAACTGCTGGTAGAAAACGCCAAACTGAAGAAAGACATCGACGACCTGAAGAACCTGCTGCAGGACACACAGAAGAGGAAAGCagTAAAGCTGCGTCAGGAGCGGGCTCTGTCAGCTTCCATCGCCTCCACATCGGCTCAGCTTGGGGAACCGGCTCCATCCACACACACGGCACCCAGtgccacacaaacacacgcacacacacaccacgacGGCAGACGCAGGAGAGAGCGGAGAGgtgtgagctgtgagtctgtgtgtgttctCTCTCGAGAGCAGAAACTGGATGTGTCTCGTCTGGATTTGCGCGTCGCTCGGATTCTGGACGTGCGGAAACATCCGGATTCAGAGTCTCTATATGTGCAGGAGGTGCGGGGGAAGGGCCTCTGCCGTGCCCCCAACATCACCAGCGGCAACATCAAATAAACACAAGCTGATCAGCTGTCAATCATCCTCAAACACTCATCAATAAATGATCGAAACTGA
>TCONS_00044627
ATGCGGTGACAGCTGAGAGACAGAGAAACACAGATCAGGAGAATAtgatcctacacacacacacacacacacacacacacacacacgctgcagCTCCTCTGCTCGAACACACACACGGCTCTCAGCTGAAGATCTGCTCTTTATTTGACATTAATAACCGCGAATATCCACCGCAGCAGATGTCTAAAGACAAGCCTCCCACATCCAGAGCAGATCCTCCACAGCAGGAGCAGATGATGGAGTATTTCACACAACAGATCCTGTTCCTGAAGGAGAAAGCCAtgctGCAGGCGTCAGTGAGGGAGGAGAAGAAACTGCTGGTAGAAAACGCCAAACTGAAGAAAGACATCGACGACCTGAAGAACCTGCTGCAGGACACACAGAAGAGGAAAGCagTAAAGCTGCGTCAGGAGCGGGCTCTGTCAGCTTCCATCGCCTCCACATCGGCTCAGCTTGGGGAACCGGCTCCATCCACACACACGGCACCCAGtgccacacaaacacacgcacacacacaccacgacGGCAGACGCAGGAGAGAGCGGAGAGgtgtgagctgtgagtctgtgtgtgttctCTCTCGAGAGCAGAAACTGGATGTGTCTCGTCTGGATTTGCGCGTCGCTCGGATTCTGGACGTGCGGAAACATCCGGATTCAGAGTCTCTATATGTGCAGGAGGTGGAGCTCGGAGAACACGCCCCCAGAACTGTGGTCAGCGGACTGACCAATCACGTGCCTCCAGAACAGttgctGGGCTCTCTGGTTGTGTTGTTGTGTAACGTGCGCTCGGTAAAGGTTCGAGGTGTTCAATCTCAGGCCCGCCTCCTCTGTGCTGTCAATCAAGAGCGGATGGAGCCGCTGACTCCGCCCACTGGAGCTCAGCCCGGAGACAGAGTGACCTTCCAGCTTTACCCTGGCGAACCAGAGAAAGAGCTGAACCccaagcagcggctgtgggagcgTCTGCTGCCTGACCTCCGCATCGATGCAAGGGGTGTGGCCACATATAGGGGCGTGGCCTTCGAGGTGCGGGGGAAGGGCCTCTGCCGTGCCCCCAACATCACCAGCGGCAACATCAAATAAACACAAGCTGATCAGCTGTCAATCATCCTCAAACACTCATCAATAAATGATCGAAACTGA
>TCONS_00044628
acacgctgcagCTCCTCTGCTCGAACACACACACGGCTCTCAGCTGAAGATCTGCTCTTTATTTGACATTAATAACCGCGAATATCCACCGCAGCAGGGAGGAAATACTGCAATTTGGGAAAGACATTGAATCCAGATGTCTAAAGACAAGCCTCCCACATCCAGAGCAGATCCTCCACAGCAGGAGCAGATGATGGAGTATTTCACACAACAGATCCTGTTCCTGAAGGAGAAAGCCAtgctGCAGGCGTCAGTGAGGGAGGAGAAGAAACTGCTGGTAGAAAACGCCAAACTGAAGAAAGACATCGACGACCTGAAGAACCTGCTGCAGGACACACAGAAGAGGAAAGCagTAAAGCTGCGTCAGGAGCGGGCTCTGTCAGCTTCCATCGCCTCCACATCGGCTCAGCTTGGGGAACCGGCTCCATCCACACACACGGCACCCAGtgccacacaaacacacgcacacacacaccacgacGGCAGACGCAGGAGAGAGCGGAGAGgtgtgagctgtgagtctgtgtgtgttctCTCTCGAGAGCAGAAACTGGATGTGTCTCGTCTGGATTTGCGCGTCGCTCGGATTCTGGACGTGCGGAAACATCCGGATTCAGAGTCTCTATATGTGCAGGAGGTGGAGCTCGGAGAACACGCCCCCAGAACTGTGGTCAGCGGACTGACCAATCACGTGCCTCCAGAACAGttgctGGGCTCTCTGGTTGTGTTGTTGTGTAACGTGCGCTCGGTAAAGGTTCGAGGTGTTCAATCTCAGGCCCGCCTCCTCTGTGCTGTCAATCAAGAGCGGATGGAGCCGCTGACTCCGCCCACTGGAGCTCAGCCCGGAGACAGAGTGACCTTCCAGCTTTACCCTGGCGAACCAGAGAAAGAGCTGAACCccaagcagcggctgtgggagcgTCTGCTGCCTGACCTCCGCATCGATGCAAGGG
>TCONS_00044629
CTCCTCTGCTCGAACACACACACGGCTCTCAGCTGAAGATCTGCTCTTTATTTGACATTAATAACCGCGAATATCCACCGCAGCAGATGTCTAAAGACAAGCCTCCCACATCCAGAGCAGATCCTCCACAGCAGGAGCAGATGATGGAGTATTTCACACAACAGATCCTGTTCCTGAAGGAGAAAGCCAtgctGCAGGCGTCAGTGAGGGAGGAGAAGAAACTGCTGGTAGAAAACGCCAAACTGAAGAAAGACATCGACGACCTGAAGAACCTGCTGCAGGACACACAGAAGAGGAAAGCagTAAAGCTGCGTCAGGAGCGGGCTCTGTCAGCTTCCATCGCCTCCACATCGGCTCAGCTTGGGGAACCGGCTCCATCCACACACACGGCACCCAGtgccacacaaacacacgcacacacacaccacgacGGCAGACGCAGGAGAGAGCGGAGAGgtgtgagctgtgagtctgtgtgtgttctCTCTCGAGAGCAGAAACTGGATGTGTCTCGTCTGGATTTGCGCGTCGCTCGGATTCTGGACGTGCGGAAACATCCGGATTCAGAGTCTCTATATGTGCAGGAGGTGGAGCTCGGAGAACACGCCCCCAGAACTGTGGTCAGCGGACTGACCAATCACGTGCCTCCAGAACAGGCCCGCCTCCTCTGTGCTGTCAATCAAGAGCGGATGGAGCCGCTGACTCCGCCCACTGGAGCTCAGCCCGGAGACAGAGTGACCTTCCAGCTTTACCCTGGCGAACCAGAGAAAGAGCTGAACCccaagcagcggctgtgggagcgTCTGCTGCCTGACCTC
>TCONS_00044630
acacacacacacacacacacacacgctgcagCTCCTCTGCTCGAACACACACACGGCTCTCAGCTGAAGATCTGCTCTTTATTTGACATTAATAACCGCGAATATCCACCGCAGCAGGGAGGAAATACTGCAATTTGGGAAAGACATTGAATCCAGATGTCTAAAGACAAGCCTCCCACATCCAGAGCAGATCCTCCACAGCAGGAGCAGATGATGGAGTATTTCACACAACAGATCCTGTTCCTGAAGGAGAAAGCCAtgctGCAGGCGTCAGTGAGGGAGGAGAAGAAACTGCTGGTAGAAAACGCCAAACTGAAGAAAGACATCGACGACCTGAAGAACCTGCTGCAGGACACACAGAAGAGGAAAGCagTAAAGCTGCGTCAGGAGCGGGCTCTGTCAGCTTCCATCGCCTCCACATCGGCTCAGCTTGGGGAACCGGCTCCATCCACACACACGGCACCCAGtgccacacaaacacacgcacacacacaccacgacGGCAGACGCAGGAGAGAGCGGAGAGgtgtgagctgtgagtctgtgtgtgttctCTCTCGAGAGCAGAAACTGGATGTGTCTCGTCTGGATTTGCGCGTCGCTCGGATTCTGGACGTGCGGAAACATCCGGATTCAGAGTCTCTATATGTGCAGGAGGTGGAGCTCGGAGAACACGCCCCCAGAACTGTGGTCAGCGGACTGACCAATCACGTGCCTCCAGAACAGGCCCGCCTCCTCTGTGCTGTCAATCAAGAGCGGATGGAGCCGCTGACTCCGCCCACTGGAGCTCAGCCCGGAGACAGAGTGACCTTCCAGCT

Function

symbol description
aimp1b Predicted to enable tRNA binding activity. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 3. Orthologous to human AIMP1 (aminoacyl tRNA synthetase complex interacting multifunctional protein 1).

GO:

id name namespace
GO:0000049 tRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-13 Predicted to enable tRNA binding activity. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 3. Orthologous to human AIMP1 (aminoacyl tRNA synthetase complex interacting multifunctional protein 1).

Ensembl:

ensembl_id ENSDARG00000036894

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044626 False 621 mRNA 0.54 5 45402128 45405968
TCONS_00044627 False 1145 mRNA 0.55 7 45402128 45407724
TCONS_00044628 False 953 nonsense_mediated_decay 0.55 8 45402277 45407642
TCONS_00044629 False 818 mRNA 0.56 7 45402293 45407631
TCONS_00044630 True 818 nonsense_mediated_decay 0.55 7 45402440 45407662

Neighbor

gene id symbol gene type direction distance location
XLOC_022671 sgms2b coding downstream 3473 45304830 ~ 45398655 (-)
XLOC_022670 NA coding downstream 62689 45155043 ~ 45339439 (-)
XLOC_022669 NA coding downstream 265496 45128099 ~ 45136632 (-)
XLOC_022668 si:ch73-168d20.1 coding downstream 282323 45077358 ~ 45119805 (-)
XLOC_022667 sh3gl2b coding downstream 353084 45043301 ~ 45049044 (-)
XLOC_022673 CABZ01076996.1 coding upstream 14709 45422433 ~ 45439903 (-)
XLOC_022674 znhit6 coding upstream 65562 45473286 ~ 45487304 (-)
XLOC_022675 col24a1 coding upstream 86965 45494689 ~ 45501177 (-)
XLOC_022676 col24a1 coding upstream 94567 45502291 ~ 45504991 (-)
XLOC_022677 CU681841.1 coding upstream 112980 45520704 ~ 45539306 (-)
XLOC_022666 NA non-coding downstream 366643 45032466 ~ 45035485 (-)
XLOC_022660 CU682777.1 non-coding downstream 563289 44824083 ~ 44838839 (-)
XLOC_022658 NA non-coding downstream 607680 44787967 ~ 44794448 (-)
XLOC_022681 NA non-coding upstream 426532 45834256 ~ 45841579 (-)
XLOC_022687 NA non-coding upstream 635848 46043572 ~ 46047869 (-)
XLOC_022689 NA non-coding upstream 767280 46175004 ~ 46175766 (-)
XLOC_022690 NA non-coding upstream 771549 46179273 ~ 46181834 (-)

Expression


Co-expression Network