XLOC_022687


Basic Information

Item Value
gene id XLOC_022687
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 46043572 ~ 46047869 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045177
agGGGAAAACAGGTGAAGCGGGGCCGCAGGGGCCTCCGGGGCCTCCAGGACCTGAGGTGAGGATTATTGTCAGATTATTCTCTGTGTTAAggagaaactctcttcattttcactcattatttctgaaaacaggactgtatgttgtgcttgtctagaaattATGACTGATTTAAGATTATTAAGGCACATACTCTATTTAAGCTTGTGCTCACTCTATTGGAGTATTTGAGCGATTTGGCAGTGATCTGCTCACAGTTTGACTTCTGTATCATATCATGTCTATAACCTTTTCATTTTGAGCATTGTAAGCTCTGGATCAGGGGTgcacaaactttttcttatgaagggccaaaaaccaaacctgactgaggctagtgggctgaaggtaaatatagctGCCATGGataatttgctcatttatttaataatgtttaaaaaaagacaggacaaaactgctttatattaactaacacTGTATTTTATAGCtttaataatgaacttattaGAGTAAAAGTCTCATTTATAGCAGAATTACAGTTGTTTTTGCCTGATTTGCTCACTGCTGTcctctgcatagtcctctatgtGTCGAGTGACAGTGTTTACATTATAATATATCTGATTTATTCACAACATTTGATTGAAAcctttcatttcagtttgctttttttgtagctcagcaataaaatgATCAGAAATAGTCACGTGAAATTACAAATGAGGATCTCTGTGATAAAGGCATTGGCCGTAACCCTCTCCATCATActcactctcctctcagatgggatggtgggccaaatcaaaggttacaatgggctggctttggcccacgggccctactttgggcatctagATGATAGATAGTAAAGCCCAAAGTGTAGAATACAGAGCGAATTGTCcagcaactgttactgttttagtttgggaaGCTCATGTTTGATAAGATGCCTCTGGTGGTGAAGCAGAGAAGAGCTCTGATATAGTCTCACTGATATACACTGGTGTAGTCTCTGAAAAGCTTTTGCAGAagtctcatttaaaatataaactcatgagacACTTGGCCTTCAAGACTTATTTTTATGTCTAGGTTACTACAAGAATGTTTTCCTgtctttgcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagagagatagacagagagagagagagagagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgagtcagagaggcaattgcaggttaggaagtgaagtggagactaaatagttgagtttttagtcgtttcttgaagacagcgagtgactctgctgttctgatgcagttagggagttcattccaccaactgggcagattgaatgcgagagttcgggaaagtgatttcttccctctttgggatggaaccacgaggcgacgttcattcacagaacgcaagtttctggagggcacatacatctgcagaagtgagagcagataagaaggagcaaagccagaagtcgctttgtaagcaaacatcagagctctgaatttgatgcgagcagcaactggcagccagtgcaaacggatgagcagcggagtgataTAGAATACAGTGAATTGTTCTTTCTCATTACTTCACATGTGTAACGTCTGGGTAAAGGTTTACATTCTCCTTGTTCTCATTGCGATTCTAAAAAGTCTTGGTTCAATGATTATAGGCAGATAAGCAAATCGTCACCTGTAGGTTTGTGAAGAGGTTAGTGGGCGGAGCCTGTTGTGTTGATACTCATGCATATTCAGGAATGGACGAAGAGGTGGTACATGAGCAGAGCTGGAGATGCCTGGTTGCGTTTTACTTCAGTTTCTGTACCCCTTTATGAAATGAGCTGTGAGCATGTGTTTGGTACTGTAGCATGATGCCTTAATGGATTAAGCCAACTCTACTCAGGAAAAcctgagggggggggggggtgaataattgacttcagctgtgtatatacacacacacaccccattaTTATCAGGGCTTCATGGCAGTGGGCGGAGTTAAAGGTCTTTTTAGTGAACTTTTGTAACTGCAGCTGTCTAATTGGTTGATTTCCtgcacagcatcatgggtaatgtagttctCCCTCAATAGTATCTGTAGTTAAACGCTTTAATATAAGTTGAACGAATATGAGCAGATGTGCTTATGTAGTGGATTAGCATCCTCCGAGCCCAACACAGCTCTGTTTTTAAACGCTTCATAAACAAACACGCAACATATAAAAGATTTATAGACGTTTTGACACATGAATGTTTGTGGATTTTGTGCTTTGGTTTGCAGTCTGTTTGGGTTTAATATGTAGCAGAGCTTTATAATAGCTGGAGAAGGTTAGCCGTTAGCATTCTCATTGATGTCAATGGCAGTGGCATGTGGCTATCAGATGTAAAAACCAGTTTATTGCAACAAAACCTCCATCAGACTACAGCTGTTTACAGGCGTCAGTGAATGAGCTGAAGTGTGTGTTTCTGGAAGACTCTTCTTGCTGttgtttgtgttattttgtgtgtttgcagATATGATTGTGGTTCCTTTTATGTGTGAATATTATCCAGTGTTTAATCTATTGTTGTGTTAGTGTAATGAACCAGCCAGCCCTCTAGTGGCTCTGCTCTGCTAGTTCAACTTAATGTGAACTAATATTTGGAGGGAAATGCTGTCAAATTAAATGTTAAGCATCatcattatttgattattaaatatttctgGCACACTTgtttaatcaataataatatttgtttactgATATTTATATCTTTTTCTATATGATTATGTAAGTAGTAATTTACAGCAATATTACTGAATTGAGGGTAAAtgctaaaaaaacaataatgataatgatataatgataacaataatacttgttgttattaaatatttttattattggtaaaatagaaatatttggttaaaatatcatttatgtaaataaaatgtataatatatttattataatattgcttattgttattattaggagTCTTTATTGTTGATTGTATCATGGTTATACTAATATAAAAtgcttaatattatttattataattaatgattcttttttacactttcaaataatttacattccttaacatttacattattttagaaTTCATaacaaaggtataataaaaatatctgtgttgtttttattattataaattctattattattattattattattattattattattattataaattttattattattattattattattttaatcattattgttattattattattattattattattattattattattattattattattattaataatattaataattgtattattgttattattattatttattttattattgttattattatcaataactgtactctaataataataattagatttttgaaataatatagtataaataattaatagtcgGATAATAATTGATGACAATAActataaatgtctttattttattcaataaaatagtaatttcattaaaaaattaatgttaataattttttataataattataatttttcatattaaaaataatattttaatttgcatttcGCAGTAAAAGATGATGTGATTTTTTTATCACAGTAATAAAGGACTCCAGCTGAACATTTCTGCTGAGAACACACTGGTGAAACCTCTTTCCCataaatataaagttttaaatCAAGACTAAACCCGGCCTGGCCCTCATATATAGCCTGTGGGCGTAGCCTGGTGACAGGTGGGTGGAGCTGAGAGGCAGAGGTAGAGCAGACGTTCGTCTCCTTGAAAGGTGAATGTAAGGTGAAGCTGTAATGCATTTCTGTTCATCTGCAGGGCTTTCCAGGAGACATCGGGGCTCCAGGACACAACGGACCCCCGGGCCCAAAGGTACAGACACAAATGAACATTATTAACATTTCCTCCTCCAAAACACTGTAGatatttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgttaagggtATTCAAGGAGCTCGGGGCCCTCAGGGACCACCAGGACCAAAGGGAACAGAGGTGa

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045177 True 4298 lncRNA 0.33 1 46043572 46047869

Neighbor

gene id symbol gene type direction distance location
XLOC_022686 ddah1 coding downstream 2954 46036684 ~ 46040618 (-)
XLOC_022685 C23H1orf52 coding downstream 8963 46030970 ~ 46034609 (-)
XLOC_022684 SYDE2 coding downstream 23346 46002859 ~ 46020226 (-)
XLOC_022683 MCOLN3 coding downstream 88395 45937468 ~ 45955177 (-)
XLOC_022682 ftr92 coding downstream 145672 45887202 ~ 45897900 (-)
XLOC_022688 CABZ01071903.1 coding upstream 349 46048218 ~ 46126444 (-)
XLOC_022689 NA coding upstream 127135 46175004 ~ 46175766 (-)
XLOC_022690 NA coding upstream 131404 46179273 ~ 46181834 (-)
XLOC_022691 tgm1l4 coding upstream 144004 46191873 ~ 46201008 (-)
XLOC_022692 NA coding upstream 160435 46208304 ~ 46217134 (-)
XLOC_022681 NA non-coding downstream 201993 45834256 ~ 45841579 (-)
XLOC_022670 NA non-coding downstream 704133 45155043 ~ 45339439 (-)
XLOC_022669 NA non-coding downstream 906940 45128099 ~ 45136632 (-)
XLOC_022666 NA non-coding downstream 1008087 45032466 ~ 45035485 (-)
XLOC_022660 CU682777.1 non-coding downstream 1204733 44824083 ~ 44838839 (-)

Expression


Co-expression Network