RNA id: TCONS_00045172


Basic Information

Item Value
RNA id TCONS_00045172
length 918
lncRNA type inter_gene
GC content 0.53
exon number 6
gene id XLOC_022660
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 44824083 ~ 44838839 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggcgCTGGTGCAGTGGGtcttcaggctgctggtggtccTGATTGTctctcagagtgtgtgtgtgatgttcttCTACACActggacacacactcacacggatgcagaatGAGGCTGCAGTACTGCTGTAACGCCACACACTCATTAATCCTCACCAAACGCAACACAGCCGTCGATCATATCATCACTTATGAAACTGAAGGGAAACGCACATACAGAGTCAAAGCAGACCTTCACAAGATGCtgccagaggacTCCCCCTGGTCTGCTGGTGCTCTGGGTCTCTGTGCTGTTGTCGGCAGCAGTGGCATCTTGAAGAACAGCAGCTGTGGACGCCAGATCGACAGCGCAGACTTCGTCATCCGGTTTAATTTAGCGTTGGTTAATGACAGCGATGTTGGACTGAAGACAGATCTGATGAACATCAACCCCTCTCAGATTCTCACAcaATACAAAACCATGGAGCAGGATCCGGGTCCGCTAGTGGAGCGTATCAGTGTGTACGGAAACTCCTCCCTCATTATTCCTGCATTTGCATATGGGTTCTGCACCTCGCCATCCCTCCGGGTCCTCCGAGTCCTGCAGCCAATCAGACCTCAGCAGCCGGTGGTGTTTTTCAACCCACATTACCTGCGTGCTCTGGACCGCTTCTGGAAGTGGCGTGGCCTGAAGGAGCCCCGCCTCTCCTCgggatttattttaattagcgcTGCACTGGAAATGTGTGAGCACGTGCACGTGTACGGATTTTGGCCCTTCGGCACCGACCTGCAGGAAAACCCCGTTCCTTACCATTATTATGACCAAAGTAAGCCAAGCCCATATATGCACCGCATGCCAGAGGAGTTTGTGCGTCTCCTGCAGCTCCACAGCCAGGGGGCGCTGACACTGCATCTGCAGCCCTGCCACACACCATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044603 lncRNA downstream 29635 44787967 ~ 44794448 (-) True XLOC_022658
TCONS_00045171 lncRNA downstream 29797 44787967 ~ 44794286 (-) False XLOC_022658
TCONS_00044604 lncRNA downstream 29926 44787967 ~ 44794157 (-) False XLOC_022658
TCONS_00044602 lncRNA downstream 29938 44787967 ~ 44794145 (-) False XLOC_022658
TCONS_00044595 lncRNA downstream 258314 44553680 ~ 44565769 (-) False XLOC_022652
TCONS_00044610 lncRNA upstream 11304 44850143 ~ 44859143 (-) False XLOC_022661
TCONS_00044615 lncRNA upstream 66064 44904903 ~ 44905923 (-) True XLOC_022663
TCONS_00045173 lncRNA upstream 193627 45032466 ~ 45035485 (-) True XLOC_022666
TCONS_00044760 lncRNA upstream 289260 45128099 ~ 45134816 (-) False XLOC_022669
TCONS_00044761 lncRNA upstream 295377 45134216 ~ 45136219 (-) False XLOC_022669
TCONS_00044605 mRNA downstream 4983 44797665 ~ 44819100 (-) True XLOC_022659
TCONS_00044601 mRNA downstream 37239 44772661 ~ 44786844 (-) True XLOC_022657
TCONS_00044600 mRNA downstream 100981 44712588 ~ 44723102 (-) True XLOC_022656
TCONS_00044599 mRNA downstream 146768 44667616 ~ 44677315 (-) True XLOC_022655
TCONS_00044598 mRNA downstream 246198 44575669 ~ 44577885 (-) True XLOC_022654
TCONS_00044608 mRNA upstream 5021 44843860 ~ 44871987 (-) False XLOC_022661
TCONS_00044609 mRNA upstream 5878 44844717 ~ 44848961 (-) False XLOC_022661
TCONS_00044613 mRNA upstream 62559 44901398 ~ 44903048 (-) True XLOC_022662
TCONS_00044614 mRNA upstream 64465 44903304 ~ 44916800 (-) False XLOC_022663
TCONS_00044616 mRNA upstream 101861 44940700 ~ 44965582 (-) True XLOC_022664
TCONS_00044578 other downstream 813542 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044573 other downstream 1293368 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044564 other downstream 1698137 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044558 other downstream 1947598 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044554 other downstream 2309081 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044611 other upstream 23013 44861852 ~ 44871940 (-) False XLOC_022661
TCONS_00044612 other upstream 23052 44861891 ~ 44879214 (-) True XLOC_022661
TCONS_00044628 other upstream 563438 45402277 ~ 45407642 (-) False XLOC_022672
TCONS_00044630 other upstream 563601 45402440 ~ 45407662 (-) True XLOC_022672
TCONS_00044637 other upstream 727837 45566676 ~ 45597854 (-) True XLOC_022678

Expression Profile

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