RNA id: TCONS_00045144


Basic Information

Item Value
RNA id TCONS_00045144
length 1594
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id XLOC_022644
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43989239 ~ 43992522 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTAAATATGAATTGAATAATAAATAGAACATATAAAATATCCCAAACACTAATAAATGAAACTAGTTTACTTGCTCAGGATAAAGCTGGATCACCATAGTCAGACCGGATAAACAAGGTGATGGATAGAAAtctttaatgcacatttttacacaaatgtaAACTGTACAGAGcatttttacagcattaaaaACATAGTACATCAGAGTTTACTGCTTCATGTGCACAAAATCAGTAGAAAAATAGttcttaaaaaagcaaaacagaCGGAATGTTGCGCTGAGCGGCAGAAGCACAGTCATATGAAACACTAACGTGAAGAGAACatctctaaaacacacacactgcccgTCTGAAACAACACTGAAATATCATTGGTTGAGAGGTTTCGAAGGTCCCGCCCACTTACAGAACCGACCGATAGCAGCAGAGGAAACTAACATGAGCAGCAGGAGCCCTTTGACCAGAGGTGAAAAACTGAAGGCTGTTTCACAGCTGtagctcacacacacacacacacacacacatgactgtCTGTAGTGTTTATAATAAAGCATATGAAGGATCCGATCTCTGTGAATCCTGCAGGTCTGAATGCGAACACACTTCACACTACAGAagctaattgtgtgtgtgtgtgtgcgcgctgtcaAACACAGTACAGAATGTGACTGTAGTGTGTGTTCAAGTATCTATAGTGCCAAAGCTGTAGCGCAGACACACTCAACAGGCTAGTTTAACTGTCCACATGTTTATAGTAGGAACTTTAAAACACCGGCTTTAAGAAAGGAAACACCGTCGCCCTCTAGAGCTgctacacacactctcactcttagccacactctctctcacacacacacacactgggtttCATGTTTCATAGCTGTAATGATGTTTGTAGTGTAAAGACTGTACACTGTCCTCTACACCCTATCACAAACCTCACTCTCTCTTAGTCATACACACATTTCCACTCACACACATACCGTTTTCTTCATGGAGACCACaataatgtccccacaaggttaaAAATGACTGGTATCACTATATTTGAAGGCACTCCCCATATATGATCTCCATAATGGAGTTAATACTGGGAACACACATACTCttttcctcatggggaccaaaaataGTGTCCTTATAAGGTTAAAAATGACTGGTATTACTATACTTGAGGGGTACCCTTATATATGATCTCCATAGTGTAGTTAATACTAGGAATCTCTCTCAATCATACACACACTCCCACTTACACACATACCATTTTCCTAATGGGGTCCAAAATAATGTCTCCATAAGACATCACACTCACATACTGTTGAGTCTGCCTGGAATGATCAGTGTAGCGGTTCACAGACATGTCGTCCCGAGTCCGTCTCAatccgtgtgtctgtgtgtgttttttttacctaCAGCAGGTTAAATGTACGCAGGTAAATCTGTCTCTCAATCCACTCAGTGAAGTGCGTCACATTGGCGTAGACACCAGGGCCCAGGACCTTAGAGAAACACACGGAGCCCCAGGAGGTCAAACCGTACAGAGACCAGTGTCCATCGTCCTCCTCGCAGACCAGCGGACCGCCACTGTCAC

Function

GO:

id name namespace
GO:0006996 organelle organization biological_process
GO:0005874 microtubule cellular_component
GO:0035173 histone kinase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045139 lncRNA downstream 59008 43928498 ~ 43930231 (-) True XLOC_022643
TCONS_00044759 lncRNA downstream 104435 43883869 ~ 43884804 (-) True XLOC_022642
TCONS_00044758 lncRNA downstream 320396 43665412 ~ 43668843 (-) True XLOC_022640
TCONS_00045134 lncRNA downstream 699788 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00044579 lncRNA upstream 21226 44013682 ~ 44015683 (-) False XLOC_022646
TCONS_00044580 lncRNA upstream 21226 44013682 ~ 44017082 (-) True XLOC_022646
TCONS_00045153 lncRNA upstream 522743 44515199 ~ 44521915 (-) False XLOC_022650
TCONS_00045154 lncRNA upstream 522743 44515199 ~ 44521915 (-) False XLOC_022650
TCONS_00045152 lncRNA upstream 522743 44515199 ~ 44521915 (-) False XLOC_022650
TCONS_00044577 mRNA downstream 271172 43695822 ~ 43718067 (-) True XLOC_022641
TCONS_00044576 mRNA downstream 275482 43695036 ~ 43713757 (-) False XLOC_022641
TCONS_00044575 mRNA downstream 379644 43597961 ~ 43609595 (-) True XLOC_022639
TCONS_00044574 mRNA downstream 393283 43535224 ~ 43595956 (-) True XLOC_022638
TCONS_00044572 mRNA downstream 502525 43467799 ~ 43486714 (-) True XLOC_022636
TCONS_00044581 mRNA upstream 198396 44190852 ~ 44226556 (-) False XLOC_022647
TCONS_00044582 mRNA upstream 198397 44190853 ~ 44207349 (-) False XLOC_022647
TCONS_00044583 mRNA upstream 214431 44206887 ~ 44233410 (-) False XLOC_022647
TCONS_00044584 mRNA upstream 218450 44210906 ~ 44219902 (-) False XLOC_022647
TCONS_00044585 mRNA upstream 223502 44215958 ~ 44233408 (-) True XLOC_022647
TCONS_00044573 other downstream 458524 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044564 other downstream 863293 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044558 other downstream 1112754 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044554 other downstream 1474237 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044552 other downstream 1585559 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044578 other upstream 17969 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044606 other upstream 831627 44824083 ~ 44838825 (-) False XLOC_022660
TCONS_00044607 other upstream 834101 44826557 ~ 44829277 (-) True XLOC_022660
TCONS_00044611 other upstream 869396 44861852 ~ 44871940 (-) False XLOC_022661
TCONS_00044612 other upstream 869435 44861891 ~ 44879214 (-) True XLOC_022661

Expression Profile

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