RNA id: TCONS_00044580


Basic Information

Item Value
RNA id TCONS_00044580
length 1817
lncRNA type lincRNA
GC content 0.39
exon number 3
gene id XLOC_022646
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 44013682 ~ 44017082 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCTCTTgctgtatgtgcatgtgtgtgtgcttgcatgtgtgtgtgtaggttcaCGTGGGCCAAAGTTCACTAACAAACACTTGATCGTCTGAGGTGAGACATGGGTGAGGAAGCACTTCGAGCAGAACAAACCGAGACCTGTGAGAAAACCGCATCACGATCATCTCGATTCTGtgctaaactgcagagctgcccAAAACCTCATGGATTCTCTGCCTCCGTCATcaccaaagCTCTGCTGGGGCTGCTGTTGTTCGGGGTGGTCTGGGCCGTGACAGGTCCCGCGTGTTTGCCAGGAAAGAACTTTTTCGGTCTGGTCATTCTGTTCCTGTCTGCAGTGTGTGGAGGAAAACTCATCAGTGTCTTCACATTACCCAGAATGCCTCCAATACCAGCTCTGTTGggtacacacacatatgcgcacacacacacacacacacacacacacacatacaattcacacatacatacacccACATAGATGAtcatacacacatatgcacacacagtaCTAGCATAGATGCACACtgacacactcaatcacacacacatgcatacatccgcacatatacacacacagacatacatgcaTGTGCGCACACACAGCCAAACATGCGCATAGGCTCATGCTTAaagtacattcacacacacatacatgcacacatacgcAAATGGACACATACAGGATTATATGCgcaaacacatgcatgcacatacacacacacacacacacacacactccaagaCTTGTGTGCAAGCTAAAATATCACTGGATTATTATAATTAGCAGCTAAATTATTGTTTGAATATGTATgcgatatatgtgtgtgtgtgtgtgtgtgtttcaggtatGCTTCTGGCTGGTGTGGTGTTGCGTAACGTGCCGTACGTCACAGATGCTGTGTATATCGATCACAACTGGTCTTCAGCTCTGAGGAACGTGGCTCTCGCTGTGATTCTCACCAGAGCCGGTCTGGGGCTCAACGCTAATgtacgtgtgtgtctgtgtgtgcgtctgtgcatgtgagcttgtgtgtgtgtgtgcatgtatgtctgAGTGTACCTTGTATTCCTCATATTGTAGGGACCAAATGTATGCGCATGTGCGTTCTAAGCACTGtttagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtatgtgtgtgtgtgtgacatatcaGGGCACAAGCGTTTGTAAtgacatgtgtatgtgtgttccagACTCCATAGttgttaaagtgtgtgtatgtgtgtgttccaGGCTCTGCGGCGTCTCAAAGGAGTGTGTGTGAGGGTTGCTGTTGGCCCGTGTGTTACAGAAGCTTGTGTCGTGGCTGTAGTGGCTCATTTTCTGCTGGATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaagaaaaaaaaaaaaaaaaaaagagggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatacacacacacacacacaacatatatatataaaaaaatatataaatatacacatatagagagagagacacacagaaaaaaaaaaaaaaaacaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:1902284 neuron projection extension involved in neuron projection guidance biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:1903670 regulation of sprouting angiogenesis biological_process
GO:1903672 positive regulation of sprouting angiogenesis biological_process
GO:0006935 chemotaxis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1990138 neuron projection extension biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0048588 developmental cell growth biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0048675 axon extension biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0060560 developmental growth involved in morphogenesis biological_process
GO:0016049 cell growth biological_process
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008201 heparin binding molecular_function
GO:1901681 sulfur compound binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194255

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045150 lncRNA downstream 21160 43989239 ~ 43992522 (-) True XLOC_022644
TCONS_00045149 lncRNA downstream 21182 43989239 ~ 43992500 (-) False XLOC_022644
TCONS_00045153 lncRNA upstream 498117 44515199 ~ 44521915 (-) False XLOC_022650
TCONS_00045154 lncRNA upstream 498117 44515199 ~ 44521915 (-) False XLOC_022650
TCONS_00045152 lncRNA upstream 498117 44515199 ~ 44521915 (-) False XLOC_022650
TCONS_00045151 lncRNA upstream 498117 44515199 ~ 44521915 (-) False XLOC_022650
TCONS_00045161 lncRNA upstream 498117 44515199 ~ 44521927 (-) False XLOC_022650
TCONS_00044577 mRNA downstream 295615 43695822 ~ 43718067 (-) True XLOC_022641
TCONS_00044576 mRNA downstream 299925 43695036 ~ 43713757 (-) False XLOC_022641
TCONS_00044575 mRNA downstream 404087 43597961 ~ 43609595 (-) True XLOC_022639
TCONS_00044574 mRNA downstream 417726 43535224 ~ 43595956 (-) True XLOC_022638
TCONS_00044572 mRNA downstream 526968 43467799 ~ 43486714 (-) True XLOC_022636
TCONS_00044581 mRNA upstream 173770 44190852 ~ 44226556 (-) False XLOC_022647
TCONS_00044582 mRNA upstream 173771 44190853 ~ 44207349 (-) False XLOC_022647
TCONS_00044583 mRNA upstream 189805 44206887 ~ 44233410 (-) False XLOC_022647
TCONS_00044584 mRNA upstream 193824 44210906 ~ 44219902 (-) False XLOC_022647
TCONS_00044585 mRNA upstream 198876 44215958 ~ 44233408 (-) True XLOC_022647
TCONS_00044578 other downstream 3141 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044573 other downstream 482967 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044564 other downstream 887736 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044558 other downstream 1137197 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044554 other downstream 1498680 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044606 other upstream 807001 44824083 ~ 44838825 (-) False XLOC_022660
TCONS_00044607 other upstream 809475 44826557 ~ 44829277 (-) True XLOC_022660
TCONS_00044611 other upstream 844770 44861852 ~ 44871940 (-) False XLOC_022661
TCONS_00044612 other upstream 844809 44861891 ~ 44879214 (-) True XLOC_022661
TCONS_00044628 other upstream 1385195 45402277 ~ 45407642 (-) False XLOC_022672

Expression Profile

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