G338504


Basic Information

Item Value
gene id G338504
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27962713 ~ 27964402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU383130
atgtattttttattttgggtACAGacatacaatatttttttttgtccaaCCTAGCACTTTTCTAAAAACATTTATACAGAATCACCTTTTAAAATATACATATTTCCTCCCGGTATTTACAGAATGTCCCCAACACCGGGGCTCGTGGGTCGCAATGATATACaaatacattgccttcagaaagtatttacgtcccttgacttattccacattgttacgtagtgggATTCAAAAATCAAGTTAACCACTAATTGCACATTTTTACTTCAGAACacttgacatttcagcttttattttgtaAACACTACCatatgtggaaaaggtcaaggggtataAATAGTTtgaatgcagtctccatgAACCTTGCCTTTCAATTTATGTAGCGCAGGTGAAACAGTTTGATCCTTGAGCCACAGGTGGTTATTGTGCTTTGGCTGCGTGGAGGAGGGAGGGCCACCCTACCTTCAGTGCTGCCAGTTAAGTCATCTTTCTGGCCCAGAAAGAAACCAAGTATCCAATGTGTCCTTATAAACCCGGGGGGACATCCAGAGAAAAACAAGGCTGCTCGTTCTCATCATAATTGTTTCTAAAACACTGCATCTCTCCTGTCCTTACGCCACTACGGAATGTCCTCATACATTTTACCTCCGTAACAGAAACCACTAAGTGACAACAAAGACTGGGATGGCTTTTAATATACTTGAGTCAGGAACACAAAGGGCCAGAACTAAAAATCAAACCAAAGACTAGTTAGCAAGAAGCTGGGAACTACAAACTTAGGAGCACCCCTGTGCCTATATAATGAGGGGATATTTTGGCAATGAgatcctttatctacttccccagagtcaatgagcttGTGGATTCTATGTCGTGTATGAAGGAAGTTGGAGGTGCTAACGCTAGTTATCAAACTGGACACAGAAacatggtatccacaagttcatctgattctggggaagtagataaagagcCTAAATGCCAAAATCCAGACAAATTCCTTTAAGCTATACTTTATAATACATACAGTAGCTTAGGCACCAGTTCCTAACATGGCAGAGTGGTTCAAGATAAGATGTCTACATTCTGCATGGGAGGGGGTGTTAAGACAACAATGCTGGCATTAAGTCCTGGGGGTGTTGTAGTTGGATAGTCCGGTGCTGACTGGTTGACCCCCAAAAGCTGCACAGTGTCCTGTCCCAACCAGACTGGTCAGGGGTGAGTTTCCCAAAAGCTTCATAGCTAACGTGGCACTTTTTCTCTAAACAACCCAGGTCCACAGCAGAGAGAAGAAACAATAATTGTCAAATCTATGTTTCACTAAATTAACTTTGCTGTTCTACGAGTGCCGTGGTCTGGGTAGAGACACACTGCCACATTGGCTAGCTTTCTGGAAACTCATTCATCCCCCTGAGACAAATGGAAACCGGTCTCAGCCACTCTGGATGTACTTCTTGATGACGACACAGCCATGTCTGAAGAGAGGGCAGGGCAGCGACTGGAGGAGCGTCCAGTTGTTAGTGTGGGGGTCAAAGGTCTCCATGTTACCCAGGGCAGGACCCTCGCTGCTCACGATGCCCCCCGTCGCATAGATCTTACCATCCAG

Function

NR:

description
PREDICTED: kelch-like protein 29

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383130 True 1606 lncRNA 0.44 3 27962713 27964402

Neighbor

gene id symbol gene type direction distance location
LOC110522440 atad2b coding upstream 346 27800923 ~ 27962367 (+)
LOC118964460 NA coding upstream 89735 27871143 ~ 27872978 (+)
LOC110522435 wdcp coding upstream 198161 27757433 ~ 27764552 (+)
opn8b LOC106608041 coding upstream 298294 27624700 ~ 27664419 (+)
LOC118964415 LOC106608050 coding upstream 361149 27537262 ~ 27601564 (+)
LOC110522445 LOC106608054 coding downstream 593798 28558200 ~ 28567300 (+)
LOC110522446 bmp2 coding downstream 665602 28630004 ~ 28636513 (+)
LOC110521072 plcb1 coding downstream 734665 28699067 ~ 28934753 (+)
LOC110522448 plcb4 coding downstream 993682 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 1189072 29153474 ~ 29163882 (+)
G338570 NA non-coding upstream 3964 27957453 ~ 27958749 (+)
G338569 NA non-coding upstream 8300 27954159 ~ 27954413 (+)
G338568 NA non-coding upstream 8726 27953688 ~ 27953987 (+)
G338567 NA non-coding upstream 9167 27953046 ~ 27953546 (+)
G338564 klhl29 non-coding downstream 46517 28010919 ~ 28035031 (+)
G338605 NA non-coding downstream 48622 28013024 ~ 28040623 (+)
G338608 NA non-coding downstream 55438 28019840 ~ 28020286 (+)
G338724 NA non-coding downstream 236016 28200418 ~ 28201053 (+)
G338731 NA non-coding downstream 243995 28208397 ~ 28211502 (+)
LOC110522355 plekhg1 other upstream 777743 27054628 ~ 27185449 (+)
G336464 NA other upstream 1067876 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 1905022 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 3539982 24420114 ~ 24422731 (+)
G339660 NA other downstream 894314 28858716 ~ 28859155 (+)
G339693 NA other downstream 950197 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1202116 29166518 ~ 29166996 (+)
G339928 NA other downstream 1370967 29335369 ~ 29336939 (+)
G342538 NA other downstream 3417424 31381826 ~ 31382749 (+)

Expression


Co-expression Network