G339376


Basic Information

Item Value
gene id G339376
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28571319 ~ 28572767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384079
GGGTTATAACTGATCTAAAGGCTGGAAAGACTATTCTACGTGGACATGTCATGAATTGCTCCCAGGGAATCACCATTGCAGAGAAAACAACTGACCAAAACATGTTTCTCAAGTTTATTTCAGTGCATCTCAGTCAGCAGAAATTCCAGTGTTTTCTCTGAAAACAAATGTCTCCTTCAACACGATAATAACCCACCACCAGAACTCTCTCTGAAATATACAGGTATTTTGGACTTGTTAATAAAATTGCAAAAAAAGTTACATTCTAAAAACATCAAACAAGTAACATGTATAAAAGAAAGCAATGAACGTATATTGATTGTGAAAGTAGCCGACAACATTGAATTCAAAGACTGTGCTACACCAAATCAAACAAGTGACAAGATGTAAAGCTCATGTGCTGAATCAATTGCTGTCTCTGCAGATGGACCATGGAACCAAAGCAGTAGGCCAGACCGTCAGACAAAGTGGCCTTGTAGAGCTGGTCTACCCTTCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCTGTAGATATGGTCTACCCTTCCTGTAGAGATGGTCTACCCACCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTCGGGATGAAATATAGTGACAAAAACATTCTACTTTTCTCTGCAATTTACAATATGAACAAATAattgatgtagtctgcaaaaccATATCAACAATGCATTTAAATGATTTCTTGCCAGCAGCACTAAGTGAAAGCTGATGTCCAGGGTTCATTCCTGCCCTCCAGTGAGTTTGTGGAAGAGTTCCTCATCCAGTGTCTCGTTCTGGTCTTTGGAGCGTGTTGAGAGGAAGATGTATCCTCCTATGTACTCATGGACCACCTTACAGTCACAGCTCACACAGGAGAAGGCTATCGACACATTCTGGTCAAACTCTATGGCCACC
>TU384081
GGGTTATAACTGATCTAAAGGCTGGAAAGACTATTCTACGTGGACATGTCATGAATTGCTCCCAGGGAATCACCATTGCAGAGAAAACAACTGACCAAAACATGTTTCTCAAGTTTATTTCAGTGCATCTCAGTCAGCAGAAATTCCAGTGTTTTCTCTGAAAACAAATGTCTCCTTCAACACGATAATAACCCACCACCAGAACTCTCTCTGAAATATACAGGTATTTTGGACTTGTTAATAAAATTGCAAAAAAAGTTACATTCTAAAAACATCAAACAAGTAACATGTATAAAAGAAAGCAATGAACGTATATTGATTGTGAAAGTAGCCGACAACATTGAATTCAAAGACTGTGCTACACCAAATCAAACAAGTGACAAGATGTAAAGCTCATGTGCTGAATCAATTGCTGTCTCTGCAGATGGACCATGGAACCAAAGCAGTAGGCCAGACCGTCAGACAAAGTGGCCTTGTAGAGATGGTCTACCCTTCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCTTCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTCGGGATGAAATATAGTGACAAAAACATTCTACTTTTCTCTGCAATTTACAATATGAACAAATAattgatgtagtctgcaaaaccATATCAACAATGCATTTAAATGATTTCTTGCCAGCAGCACTAAGTGAAAGCTGATGTCCAGGGTTCATTCCTGCCCTCCAGTGAGTTTGTGGAAGAGTTCCTCATCCAGTGTCTCGTTCTGGTCTTTGGAGCGTGTTGAGAGGAAGATGTATCCTCCTATGTACTCATGGACCACCTTACAGTCACAGCTCACACAGGAGAAGGCTATCGACACATTCTGGTCAAACTCTATGGCCACC
>TU384082
GGGTTATAACTGATCTAAAGGCTGGAAAGACTATTCTACGTGGACATGTCATGAATTGCTCCCAGGGAATCACCATTGCAGAGAAAACAACTGACCAAAACATGTTTCTCAAGTTTATTTCAGTGCATCTCAGTCAGCAGAAATTCCAGTGTTTTCTCTGAAAACAAATGTCTCCTTCAACACGATAATAACCCACCACCAGAACTCTCTCTGAAATATACAGGTATTTTGGACTTGTTAATAAAATTGCAAAAAAAGTTACATTCTAAAAACATCAAACAAGTAACATGTATAAAAGAAAGCAATGAACGTATATTGATTGTGAAAGTAGCCGACAACATTGAATTCAAAGACTGTGCTACACCAAATCAAACAAGTGACAAGATGTAAAGCTCATGTGCTGAATCAATTGCTGTCTCTGCAGATGGACCATGGAACCAAAGCAGTAGGCCAGACCGTCAGACAAAGTGGCCTTGTAGAGATGGTCTACCCTTCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTCGGGATGAAATATAGTGACAAAAACATTCTACTTTTCTCTGCAATTTACAATATGAACAAATAattgatgtagtctgcaaaaccATATCAACAATGCATTTAAATGATTTCTTGCCAGCAGCACTAAGTGAAAGCTGATGTCCAGGGTTCATTCCTGCCCTCCAGTGAGTTTGTGGAAGAGTTCCTCATCCAGTGTCTCGTTCTGGTCTTTGGAGCGTGTTGAGAGGAAGATGTATCCTCCTATGTACTCATGGACCACCTTACAGTCACAGCTCACACAGGAGAAGGCTATCGACACATTCTGGTCAAACTCTATGGCCACC
>TU384083
GGGTTATAACTGATCTAAAGGCTGGAAAGACTATTCTACGTGGACATGTCATGAATTGCTCCCAGGGAATCACCATTGCAGAGAAAACAACTGACCAAAACATGTTTCTCAAGTTTATTTCAGTGCATCTCAGTCAGCAGAAATTCCAGTGTTTTCTCTGAAAACAAATGTCTCCTTCAACACGATAATAACCCACCACCAGAACTCTCTCTGAAATATACAGGTATTTTGGACTTGTTAATAAAATTGCAAAAAAAGTTACATTCTAAAAACATCAAACAAGTAACATGTATAAAAGAAAGCAATGAACGTATATTGATTGTGAAAGTAGCCGACAACATTGAATTCAAAGACTGTGCTACACCAAATCAAACAAGTGACAAGATGTAAAGCTCATGTGCTGAATCAATTGCTGTCTCTGCAGATGGACCATGGAACCAAAGCAGTAGGCCAGACCGTCAGACAAAGTGGCCTTGTAGAGATGGTCTACCCTTCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCTTCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCTGTAGATATGGTCTACCCTTCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTCGGGATGAAATATAGTGACAAAAACATTCTACTTTTCTCTGCAATTTACAATATGAACAAATAattgatgtagtctgcaaaaccATATCAACAATGCATTTAAATGATTTCTTGCCAGCAGCACTAAGTGAAAGCTGATGTCCAGGGTTCATTCCTGCCCTCCAGTGAGTTTGTGGAAGAGTTCCTCATCCAGTGTCTCGTTCTGGTCTTTGGAGCGTGTTGAGAGGAAGATGTATCCTCCTATGTACTCATGGACCACCTTACAGTCACAGCTCACACAGGAGAAGGCTATCGACACATTCTGGTCAAACTCTATGGCCACC
>TU384084
GGGTTATAACTGATCTAAAGGCTGGAAAGACTATTCTACGTGGACATGTCATGAATTGCTCCCAGGGAATCACCATTGCAGAGAAAACAACTGACCAAAACATGTTTCTCAAGTTTATTTCAGTGCATCTCAGTCAGCAGAAATTCCAGTGTTTTCTCTGAAAACAAATGTCTCCTTCAACACGATAATAACCCACCACCAGAACTCTCTCTGAAATATACAGGTATTTTGGACTTGTTAATAAAATTGCAAAAAAAGTTACATTCTAAAAACATCAAACAAGTAACATGTATAAAAGAAAGCAATGAACGTATATTGATTGTGAAAGTAGCCGACAACATTGAATTCAAAGACTGTGCTACACCAAATCAAACAAGTGACAAGATGTAAAGCTCATGTGCTGAATCAATTGCTGTCTCTGCAGATGGACCATGGAACCAAAGCAGTAGGCCAGACCGTCAGACAAAGTGGCCTTGTAGAGCTGGTCTACCCTTCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCTGTAGATATGGTCTACCCTTCCTGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTACCCATCCTGTAGATATGGTCTACCCTTCCTGTAGAGATGGTCTACCCACCCGGTAGAGATGGTCTACCCATCCGGTAGAGATGGTCTCGGGATGAAATATAGTGACAAAAACATTCTACTTTTCTCTGCAATTTACAATATGAACAAATAattgatgtagtctgcaaaaccATATCAACAATGCATTTAAATGATTTCTTGCCAGCAGCACTAAGTGAAAGCTGATGTCCAGGGTTCATTCCTGCCCTCCAGTGAGTTTGTGGAAGAGTTCCTCATCCAGTGTCTCGTTCTGGTCTTTGGAGCGTGTTGAGAGGAAGATGTATCCTCCTATGTACTCATGGACCACCTTACAGTCACAGCTCACACAGGAGAAGGCTATCGACACATTCTGGTCAAACTCTATGGCCACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384079 False 965 lncRNA 0.42 2 28571319 28572767
TU384081 False 943 lncRNA 0.42 3 28571319 28572767
TU384082 False 877 lncRNA 0.41 4 28571319 28572767
TU384083 False 1141 lncRNA 0.44 3 28571319 28572767
TU384084 True 1119 lncRNA 0.44 2 28571319 28572767

Neighbor

gene id symbol gene type direction distance location
LOC110522445 LOC106608054 coding upstream 4019 28558200 ~ 28567300 (+)
LOC110522440 atad2b coding upstream 608952 27800923 ~ 27962367 (+)
LOC118964460 NA coding upstream 698341 27871143 ~ 27872978 (+)
LOC110522435 wdcp coding upstream 806767 27757433 ~ 27764552 (+)
opn8b LOC106608041 coding upstream 906900 27624700 ~ 27664419 (+)
LOC110522446 bmp2 coding downstream 57237 28630004 ~ 28636513 (+)
LOC110521072 plcb1 coding downstream 126300 28699067 ~ 28934753 (+)
LOC110522448 plcb4 coding downstream 385317 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 580707 29153474 ~ 29163882 (+)
LOC118964462 NA coding downstream 602559 29174963 ~ 29176894 (+)
G339362 NA non-coding upstream 19006 28545713 ~ 28552313 (+)
G339334 LOC100194698 non-coding upstream 73557 28491256 ~ 28497762 (+)
G339265 NA non-coding upstream 175217 28395892 ~ 28396102 (+)
G339254 NA non-coding upstream 185429 28385605 ~ 28385890 (+)
G338813 NA non-coding upstream 216632 28338033 ~ 28354687 (+)
G339562 NA non-coding downstream 83425 28656192 ~ 28656552 (+)
G339583 NA non-coding downstream 131364 28704131 ~ 28704994 (+)
G339590 NA non-coding downstream 140196 28712963 ~ 28713614 (+)
G339591 NA non-coding downstream 141134 28713901 ~ 28714105 (+)
G339592 NA non-coding downstream 141444 28714211 ~ 28714439 (+)
LOC118964415 LOC106608050 other upstream 969763 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1386349 27054628 ~ 27185449 (+)
G336464 NA other upstream 1676482 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 2513628 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 4148588 24420114 ~ 24422731 (+)
G339660 NA other downstream 285949 28858716 ~ 28859155 (+)
G339693 NA other downstream 341832 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 593751 29166518 ~ 29166996 (+)
G339928 NA other downstream 762602 29335369 ~ 29336939 (+)
G342538 NA other downstream 2809059 31381826 ~ 31382749 (+)

Expression


Co-expression Network