G341983 (LOC106608127)


Basic Information

Item Value
gene id G341983
gene name LOC106608127
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 30954756 ~ 31012694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU386998
GATTTAAACAGTAATACTCACTAGTTAGAACAGACAGATGAACTGGAGCATCACCTCCATGTCGTGGTCCAGTCTCTGTAAGGAACTGTCGACAGGTGTAGAGTCCAACATCCTCAGCTCTGACATCACTAACATGTAGAGAACAGTTAGACCCTAAACtcagtctctctgctctctctgtctggtcaacTTTGATCTTCCCCAATGTGACCTTTTGAATAGTACCAGTAGATCCAGCTCTGTTATAGATCCATATAGTTGAGGAACAGTCTGGATAAACCACATTGTTACACGGCAGACTGACATCATCTCCCACTCTGGAGAACATAGAGAGAGTTT

Function

NR:

description
uncharacterized protein LOC110522485

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU386998 True 339 lncRNA 0.44 2 30954756 31012694

Neighbor

gene id symbol gene type direction distance location
LOC110522477 mgat2 coding upstream 131697 30816416 ~ 30823059 (+)
LOC110522479 NA coding upstream 157069 30796219 ~ 30797687 (+)
LOC110522472 rs30 coding upstream 997198 29952461 ~ 29957558 (+)
LOC110522470 prpf39 coding upstream 1002629 29942176 ~ 29952127 (+)
LOC110522467 LOC106608085 coding upstream 1111846 29838369 ~ 29842910 (+)
LOC110522488 hs90a coding downstream 156957 31169651 ~ 31182712 (+)
ppp2r5cb LOC106608134 coding downstream 174532 31187226 ~ 31227364 (+)
slc25a29 LOC106608124 coding downstream 379485 31392179 ~ 31401929 (+)
LOC110522495 NA coding downstream 396594 31408651 ~ 31412134 (+)
LOC110522493 LOC106608104 coding downstream 405772 31417955 ~ 31422086 (+)
G341922 NA non-coding upstream 127802 30826550 ~ 30826954 (+)
G341921 NA non-coding upstream 128472 30825553 ~ 30826284 (+)
G341909 NA non-coding upstream 140157 30813598 ~ 30814599 (+)
G341914 NA non-coding upstream 149141 30805393 ~ 30805615 (+)
G341912 NA non-coding upstream 152062 30800295 ~ 30802694 (+)
G342050 NA non-coding downstream 82994 31095688 ~ 31096427 (+)
G342072 NA non-coding downstream 121698 31134392 ~ 31134598 (+)
G342076 NA non-coding downstream 126095 31138789 ~ 31138992 (+)
G342077 NA non-coding downstream 126623 31139317 ~ 31139564 (+)
G342082 NA non-coding downstream 132848 31145542 ~ 31145903 (+)
G339928 NA other upstream 1617817 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 1787760 29166518 ~ 29166996 (+)
G339693 NA other upstream 2039217 28914599 ~ 28915539 (+)
G339660 NA other upstream 2095601 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 3353200 27537262 ~ 27601564 (+)
G342538 NA other downstream 369132 31381826 ~ 31382749 (+)
G342571 NA other downstream 438439 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 773171 31785865 ~ 31786206 (+)
G343958 NA other downstream 1682292 32694986 ~ 32704371 (+)

Expression


Co-expression Network