G342699 (LOC106608120)


Basic Information

Item Value
gene id G342699
gene name LOC106608120
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 31767311 ~ 31767776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU387836
CACCTTGTTGTGTGAGCCCTGGGTGACGGTGGACGCCCGGAAAAGGGCGGAGCTCGCCGCGTGGCACGCCACCCGGTCCTCCAGCAGGAAGCCCAGGAAGAACACCAGCGACACCATCATGTAGCACATGGCGTAGAAGATGATTGGGCGCTCTGGGTAGCGGAACCTGGACACATCGATGAGGAAGGTGAGGAAGGTGAAGAGGGTTGCCGAGAGACAGACAATGGACACCACGCCGATGAAGTAGCGGGCAAACACCAGCTCGTCCCGCTGGAAATACATGTTGGGGCAGGGGGGCGAGCAGTCCGTCACACCCAGGAAGGAGTAGCCCAGGTTGGGGTCGATCTTGAGCTCCCGGGGGCACCAGAAGCCATAGTCGTGCTGGACGGAGATGGGCGACTCAGTGGAGTCTGCGCTGGAGAGCAGGTCTCCAGGACGGGGGTATGATTCGTCACAGTCTGGGAAC

Function

NR:

description
frizzled-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU387836 True 466 lncRNA 0.61 1 31767311 31767776

Neighbor

gene id symbol gene type direction distance location
LOC110521078 LOC106608118 coding upstream 17708 31632668 ~ 31749603 (+)
LOC110521077 LOC106608119 coding upstream 144231 31607865 ~ 31623080 (+)
LOC110522497 sn25a coding upstream 261711 31470148 ~ 31505600 (+)
LOC118964493 NA coding upstream 308052 31456014 ~ 31459259 (+)
LOC110521075 NA coding upstream 311985 31422817 ~ 31455326 (+)
LOC118964494 NA coding downstream 35970 31803746 ~ 31808383 (+)
LOC110522501 LOC106571602 coding downstream 212819 31980595 ~ 32015870 (+)
tdrd6 tdrd6 coding downstream 260264 32028040 ~ 32052842 (+)
LOC110521080 ints9 coding downstream 304985 32072761 ~ 32082328 (+)
LOC118964510 NA coding downstream 324384 32092160 ~ 32092446 (+)
G342698 LOC106608120 non-coding upstream 646 31766307 ~ 31766665 (+)
G342697 NA non-coding upstream 1267 31765794 ~ 31766044 (+)
G342695 NA non-coding upstream 2357 31764723 ~ 31764954 (+)
G342693 NA non-coding upstream 4493 31758837 ~ 31762818 (+)
G342691 NA non-coding upstream 13549 31753541 ~ 31753762 (+)
G342701 NA non-coding downstream 752 31768528 ~ 31768831 (+)
G342703 NA non-coding downstream 9304 31777080 ~ 31777309 (+)
G342937 NA non-coding downstream 37248 31805024 ~ 31805543 (+)
G342938 NA non-coding downstream 37791 31805567 ~ 31805855 (+)
G342943 NA non-coding downstream 41485 31809261 ~ 31811234 (+)
G342571 NA other upstream 315835 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 348055 31417955 ~ 31422086 (+)
G342538 NA other upstream 384562 31381826 ~ 31382749 (+)
G339928 NA other upstream 2430372 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 2600315 29166518 ~ 29166996 (+)
G342707 LOC106608120 other downstream 18089 31785865 ~ 31786206 (+)
G343958 NA other downstream 927210 32694986 ~ 32704371 (+)
LOC110521085 LOC100380634 other downstream 1704276 33469529 ~ 33489784 (+)
G344647 NA other downstream 1784351 33552127 ~ 33554003 (+)
LOC110522521 NA other downstream 1817202 33584945 ~ 33586386 (+)

Expression


Co-expression Network