c5h9orf78 (cssa01h9orf78)


Basic Information

Item Value
gene id c5h9orf78
gene name cssa01h9orf78
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15810578 ~ 15814802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160625.2
GTTATTATTGTTGGCAAAAGAGCATCTGCGTACACTGTAAAGTCGTGTACACAACGTTTGCTACCATCCTTTCGAAAACTCTACAATAATGCCGTCGGGAAAAAACTTTAGAAGGAGAAGGGAAAGCTCTTCGGATGAAGAGGAAGACGAGATAACAGCTGAAGTTAGATCGAAACTGGACGAAGCTAAAGAACTTCAGAGTTTACGGAAAAGACAGACTGGAGTTAGCGTGGCCGCATTGTTGGAGGGGGAGAAACTTCGCTTGGACGAAGGGGGTGATAATGACCCTTTTAAATTGAAGACAGGGGGGGTTGTTGACATGAAAAAAGTTAAAGACCGGGCCAGAGACATGACCGATGACGACACAGGGGACCTTAATCTGGGCACCTCTTTCTCTGCCGAGACCAACAGACGAGATGAAGATGCCGACATGATGAAGTACATTGAGACAGagctgaagaagaagaagggctTGGTGGAAGCGGAGGAGCAGAAGGTAAAAGTGAAGAACGCTGAGGACCTCCTGTACGAGCTGCCGGAGAACATCCGAGTCAACTCGGCCAAGAAGACTGAAGAGATGTTGTCCAATCAGATGCTGAGTGGGATCCCCGAAGTTGACCTTGGCATTGATGCTAAGATAAAGAACATCATCTTCACAGAAGAGGCCAAGGCCAAGCTGCTACAGGATCAAAGGAACAAGAAGAAGGACAACGGTACCTCCTTCGTCCCCACCAACATCGCTGTCAACTACGTCCAGCACAACCGCTTCTACCGTGAAGACGTGAACGCCCCACAGAGACACCACAACAGACACAAACCAAAGGAGCCAGAGGCCAGGCCTCTTCGTGTGGGTGACACAGAGaaaccaggaccagaggCTGTGGAACCAGCCAACCATCGTAAGAGGCCTAACAACGAGAAGGCCACGGACGACTACCACTACGAGAAGTTCAAGAAGATGAACCGTAGATACTGAGGATAGATTTGCCCTTTGACTGGAATTTGGATAATCTCCATTGAACATGATTTTTAGTCTAGGGCTAGGCTTAGTTTTTCCTTTAGAAAAACAAATCTATGCCCATTTGTATAAATAGCCCCTTCTGCTTTTTGTTTCCagcttttgttgttttgtctggGACTCGATTGATGTAGTGTATTCTATCAATAGCATGTGAAATGTCATACATCTGAATTATTTGATGTCATTCCATCCTTGGTTTCTACAATAAATGTACCATGTTCTCTTTGACATTTGTCAG

Function

NR:

description
CI078 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160625.2 True 1259 mRNA 0.46 9 15810578 15814802

Neighbor

gene id symbol gene type direction distance location
LOC118964750 NA coding downstream 15041 15795463 ~ 15795537 (-)
rpl7a rpl7a coding downstream 15165 15791511 ~ 15795413 (-)
LOC118964755 NA coding downstream 15369 15795141 ~ 15795209 (-)
LOC118964756 NA coding downstream 15771 15794739 ~ 15794807 (-)
LOC118964747 NA coding downstream 16163 15794344 ~ 15794415 (-)
LOC118964568 LOC106568982 coding upstream 57976 15872778 ~ 15895178 (-)
LOC118964569 LOC106594099 coding upstream 83875 15898677 ~ 15899294 (-)
LOC110523317 LOC106568982 coding upstream 87414 15902216 ~ 15926643 (-)
garnl3 LOC106562762 coding upstream 124149 15938951 ~ 16121310 (-)
LOC118964745 NA coding upstream 388888 16203690 ~ 16205002 (-)
LOC110523302 NA non-coding downstream 103051 15693396 ~ 15707607 (-)
G372015 NA non-coding downstream 124467 15685898 ~ 15686111 (-)
G371956 NA non-coding downstream 202945 15598237 ~ 15607633 (-)
G371954 NA non-coding downstream 203411 15603974 ~ 15607167 (-)
G371994 NA non-coding downstream 215294 15593717 ~ 15595284 (-)
G372054 NA non-coding upstream 2038 15816840 ~ 15817633 (-)
G372056 NA non-coding upstream 4182 15818984 ~ 15819222 (-)
G372058 NA non-coding upstream 6883 15821685 ~ 15821906 (-)
G372059 NA non-coding upstream 7656 15822458 ~ 15822944 (-)
G372060 NA non-coding upstream 8499 15823301 ~ 15823630 (-)
G371294 LOC106569911 other downstream 685789 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 815419 14988147 ~ 14995197 (-)
G370635 NA other downstream 1381987 14427338 ~ 14428591 (-)
G370333 NA other downstream 1601873 14207190 ~ 14208705 (-)
G372122 NA other upstream 160804 15975606 ~ 15976116 (-)
G372123 NA other upstream 163700 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1119433 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1309235 17124037 ~ 17125807 (-)
LOC110523354 LOC106569496 other upstream 1674224 17483696 ~ 17521507 (-)

Expression


Co-expression Network