LOC110523354 (LOC106569496)


Basic Information

Item Value
gene id LOC110523354
gene name LOC106569496
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17483696 ~ 17521507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601980.2
AGCTATTTGTGCCAAAGCGCGTGGAGCAACAGCACTCTGTCCGTGTCTGTCCTCTCGGTCGTTGCGATGTAGGCTACGGAGCATCTTCACAGCAACGCTTTCTCATTAACAAGTGGCGCACATACATCTCTTTGGACTTTTGGGTCTTCCATATTCACATTTTGGAAGGAAATATAAATTGGACATCTTTTTCAAGTTACTCAAGatTCCACCATGACGCACGCTCTGGATCCCATCAGCTCCAACAGCACAGAAGACTGGAACACCACTTTCTTCACCTCTTCCAGGGACCTCCAGCACCCCCCATACCCATATTACCAACAGAACATCACCTACGTGGACCTCTACCTCCACAAGCCCTCGGTAGTGGTAGTCTTCATTGTGTCTTACTTGCTCATTTTCCTGGTCTGCATGGTGGggaattgtgttgtgtgtttcATTGTGTTGCGAAGCAAGAACATGAGGACGGTCACCAACCTCTTTATACTCAACCTGGCCATCAGTGACCTACTGGTGGGCATCTTCTGCATGCCAACTACCCTGGTGGACAACATCATAACAGGCTGGCCTTTTGGGAGGTTAGTGTGTAAGCTGAGTGGGATGGTTCAAGGCATATCAGTGTCAGCTTCAGTCTTTACTCTGGTGGCCATAGCTGTGGATAGGTTCCGCTGCATCGTATACCCCTTCAAGCAGAAGCTGACAATCTCCACCTCCAcactgatcatcatcatcatctgggtGCTGGCTATCTCCATAATGTGTCCCTCAGGGGTCATGCTCCAGGTGACCAAGGAGCAGCGTGTCCTTATCCTACTGGGGGACGGCTACAACAACACCCGCCCCTTCTACTGGTGCCGTGAGAACTGGCCCAATCAAGAGATGAGGAAGATCTACACCACCGTCCTATTCGCTAACATCTATCTAGCCCCATTATCACTCATTGTCATCATGTACGCCCGCATCGGATTCACCCTCTTTAAGACGGCCATACCCTCCTCCGGCGGGTGCAGTGGTAGTGGCAGCAGCGGTGGGACGAAACCCAGCCTGGACAACAACCGTCAgtcgaagaagaagaagagggtgaTCAAGATGCTGTTGGTAGTAGCGCTTCTCTTCATCCTGTCATGGCTCCCGCTGTGGACGCTGATGATGCTAAGCGACTACGCCAGCCTGACGGCAAGCCAGCACCGCATCATCAACATCTACGTGTACCCGCTAGCCCACTGGCTGGCCTTCTTCAACTCCTCCGTCAACCCCATCATCTACGGCTTCTTCAATGAGAACTTCCGACGGGGGTTCCAGGCCGCATTTAAATTCCAGCTGTGCTCCGCAGTCATGGAGCGGCAGAAGACCTACTCGCATCGTATCCAAGGCAACGCAGTGTTACCAGCGAACCTGCACCTGCCCACCGGGGCCGGCTCAGGGGGGTCGGAATTGGCTTTGGTGAACAGGAAGGGGCTGGGTCGGGAGGAAGTTGTCGGGCGGACATCCGGCGGGCGATCGTCAGAGAGCGACGTGAAGGAGCAGGATCTGATCAtggaggatctggagaagGTTATATATGACCTATGAGACACACTTAATGTCACAAAGAAATTGTGCAGTCAACCTTCATTCAGCCGTGCAGTAGCCAGTGGACATCAATTTCCTCATGGCTCTTTAGGGTCATGACTGACTGGTGACATTTAAGGATGACATCTCACACTTAAGAGGGACATCTTATTGAATGTCATATGATATGCATGGATTCATCCTTACCAGTGGACAATACCTGTGCCTCTTGCTGGGCTATGCTCAGTCAAAGAGGGGAGTGGGAGGGTGGATGGATGCAGGGGGACACTTGTTGTGCTCCGCACCTCTGTCAAAGGTGGGAGTGAGAGGATGGATGCAGAGGGACACTTGTTGTGCTCCACACCTCTCAGTCAAAGGGAGGGACACTCAGAGCCGAGGCGAACGCAGTGATGTGCCTATTCAGTTGCCTTGGGACTGATTAGAACATGACAAGAGACCATGCAGGGATGAGAGATGCCTCCTGCTGCTGCACACTTAGACAAGAGGACTGGGAATAAAAGGGAATAGAATCAACCAACCACCAACAGTTAAGCAGTGTACTTATGAGATACAGCGAAGGATATTATTTTATGTTGTTTTGTTTGTATTTGAACAGTGATTGTGAATATTCATTTTTAACGATGAGTGTCTTGCACTAGAATTTTATGCTGCTTTTCTGTGTGCTAAAATATTGTAAACTCTTCTGCTGAACAGGAATAGTTGTTCTGACTAATTTATCCTTGTTAACAAAGAAAATATTACTTTATGACTGACAGCCTACTTAATTTGGAGGCTAAGGAATCTATATGTCATATAAATACAGTGGCGGTGGAATTTTGTAGCTGTATTCATGCATGTTTTACTCTTTTGGAAAACCTTT
>TU424729
AAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGTTGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGTTGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGTTGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGATGTTGGAAAACCTTTATGTTGTGGAAAATAACTGGTAGCCTAATATTTCACTTCCATCATGGTTTCTAGTTCCCACGCAACACTGTGTCTTAACATCACAGTTATGTCAGTCGACACAATGACACTGTTAGGAAACAGGGAATTATGGATCTAGACCAAGGCTCTCCAaacttgttcctggagagctatcctcctgtaggttctcGTTCCAACCCCAGAAGTATAGCCTGATTTGGCTTATCAACCAGCTCGTTGTCAGATTAAGGTGTGCTAAATTAGgattggagcaaaaacctacaggaacTGTCCCGTTCGTcagcgtggtatgcgtacattctttatAAGGATGAACACAGAACaaactaaccaaaataacaaaacgacatGTGATGCTATACAAATGAGTGCTAataggcaactacacatagacaagaacccacaaacacaaaaaggaaaatggctacctaaatatgatccccaatcagagacaacgataaacagctgactctgattgggaacaatatcaggccaccatagacatacaaatgacctagacctacaaaacccctagacatacaaaaacctagacaatacaaaaactagtatacccaccctcgtcacaccctgacctaaccaaaatataaagaaaacagagatatctaaggtcagagcgtgacaggaACAGGGTTTGTTGTATAAAagggtttgttgtttgtttatgtaCTGTATCATATCTGTCAAAGTCATCAAATGTCATCAAATGTTATGATAGGTTGTCTGTTGTTGTCATGAAACTGACAGGGCTGTGATTTGTCATGAAGTGTTGCCACAATAGCGGTGTTGTGATTGTCCGGTTCAAGAAATTTGTAAAAATACATACCTCAGCTTATCGGTTGAAGATGAGTCCACCCAGCCTCTGAGATTGTACAATCATTTGAACTGTTTACAGCTGCTAAGTAATCGTAATAAATCAGTTAAAAATTATTTAATTTTGAAGATTATCAAAGGCGTGTGTTCCCACATGAAAAAACAGtttagtattcactgtagtggtTTTgcggactttactgtagtattcactgtagtgtttatgCAGACTaaagtactgtagtatttactctagtgtttttgcagacattacagtagtattTACAATACTGCTTTTGTTATATCATTGACATAGCAGTGATGGCTTTGTCtttgaggaaacctactggacaAAATACTCAAAGAGCAGATTTTCCATAACACGTATGTAGgattcagagcttctgctcttttttTTAATAAACTGTAGGTAACACAttatatggtctatacttggcatgtaggtttcgtATGGGTGGCACACATTGGGATATGGGTTAATGGGCAGTGTATATGCAAATCAAATACTTGAatgtatactatagtaattactgtagtgtttttgcggataTTACTGTACTATTAAAGTGTTTTGCAGACTAGTGTTTTTGTGAACATTACTATAGTATTTGCTGTGGTGTTTTTGTGGTCTgaagtatactgtagtatttactctacagtatactacaacattctatagtaagtactacacattcTCGAggtatactacagtgtgtagtaggTGGGTATTCTACAGTTTAccacagaattctatagtaagtactgtagtattctatagtaaactgtaaacTTTTACATGtgggttgttatgttgtgttactgGGCTTCTGCGTAAATGCTTTGTACTCTGTATGAGCTTATCATTGCTAATGGAGGAGAACATTGTGG
>TU424730
GTGGAGCAACAGCACTCTGTCCGTGTCTGTCCTCTCGGTCGTTGCGATGTAGGCTACGGAGCATCTTCACAGCAACGCTTTCTCATTAACAAGTGGCGCACATACATCTCTTTGGACTTTTGGGTCTTCCATATTCACATTTTGGAAGGAAATATAAATTGGACATCTTTTTCAAGTTACTCAAGatTCCACCATGACGCACGCTCTGGATCCCATCAGCTCCAACAGCACAGAAGACTGGAACACCACTTTCTTCACCTCTTCCAGGGACCTCCAGCACCCCCCATACCCATATTACCAACAGAACATCACCTACGTGGACCTCTACCTCCACAAGCCCTCGGTAGTGGTAGTCTTCATTGTGTCTTACTTGCTCATTTTCCTGGTCTGCATGGTGGggaattgtgttgtgtgtttcATTGTGTTGCGAAGCAAGAACATGAGGACGGTCACCAACCTCTTTATACTCAACCTGGCCATCAGTGACCTACTGGTGGGCATCTTCTGCATGCCAACTACCCTGGTGGACAACATCATAACAGGCTGGCCTTTTGGGAGGTTAGTGTGTAAGCTGAGTGGGATGGTTCAAGGCATATCAGTGTCAGCTTCAGTCTTTACTCTGGTGGCCATAGCTGTGGATAGGTTCCGCTGCATCGTATACCCCTTCAAGCAGAAGCTGACAATCTCCACCTCCAcactgatcatcatcatcatctgggtGCTGGCTATCTCCATAATGTGTCCCTCAGGGGTCATGCTCCAGGTGACCAAGGAGCAGCGTGTCCTTATCCTACTGGGGGACGGCTACAACAACACCCGCCCCTTCTACTGGTGCCGTGAGAACTGGCCCAATCAAGAGATGAGGAAGATCTACACCACCGTCCTATTCGCTAACATCTATCTAGCCCCATTATCACTCATTGTCATCATGTACGCCCGCATCGGATTCACCCTCTTTAAGACGGCCATACCCTCCTCCGGCGGGTGCAGTGGTAG

Function

NR:

description
neuropeptide FF receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601980.2 False 2431 mRNA 0.49 6 17485896 17521507
TU424729 False 2187 lncRNA 0.36 2 17483696 17485903
TU424730 True 996 TUCP 0.50 5 17489026 17521487

Neighbor

gene id symbol gene type direction distance location
LOC110523351 LOC106569451 coding downstream 306771 17161638 ~ 17179125 (-)
LOC110523350 LOC106569446 coding downstream 327818 17153464 ~ 17158078 (-)
hwa LOC106569438 coding downstream 335820 17147848 ~ 17150076 (-)
haus1 haus1 coding downstream 365955 17117368 ~ 17119941 (-)
LOC110523345 LOC106569410 coding downstream 376753 17092271 ~ 17109143 (-)
nbc nbc coding upstream 77401 17598908 ~ 17688319 (-)
dck dck coding upstream 182413 17703920 ~ 17713895 (-)
LOC110523355 mol1a coding upstream 193142 17714649 ~ 17722603 (-)
LOC110523358 NA coding upstream 335994 17857501 ~ 17859597 (-)
foxd1 LOC106569011 coding upstream 511313 18032820 ~ 18034641 (-)
G373535 NA non-coding downstream 6554 17479134 ~ 17479342 (-)
G373516 NA non-coding downstream 47536 17437636 ~ 17438360 (-)
G373509 NA non-coding downstream 57775 17420943 ~ 17428121 (-)
G373508 NA non-coding downstream 58304 17420293 ~ 17427592 (-)
G373504 NA non-coding downstream 67874 17417673 ~ 17418022 (-)
G373619 NA non-coding upstream 17865 17539372 ~ 17539579 (-)
G373622 NA non-coding upstream 19701 17541208 ~ 17541439 (-)
G373637 NA non-coding upstream 29238 17550745 ~ 17550948 (-)
G373645 NA non-coding upstream 34404 17555911 ~ 17556178 (-)
G373656 NA non-coding upstream 42868 17564375 ~ 17564594 (-)
G373228 LOC106569424 other downstream 360089 17124037 ~ 17125807 (-)
LOC110523341 LOC106569324 other downstream 543705 16909582 ~ 16942359 (-)
G372123 NA other downstream 1504681 15978502 ~ 15981215 (-)
G372122 NA other downstream 1509780 15975606 ~ 15976116 (-)
LOC110523302 NA other downstream 1787567 15693396 ~ 15707607 (-)
G374189 NA other upstream 481313 18002820 ~ 18003170 (-)
G374786 NA other upstream 1036633 18558140 ~ 18559167 (-)
G377800 NA other upstream 3172589 20694096 ~ 20694708 (-)
G377809 LOC106568602 other upstream 3183106 20704613 ~ 20705140 (-)
G377991 NA other upstream 3507951 21029458 ~ 21029783 (-)
LOC110523354 LOC106569496 other upstream 3123 17483696 ~ 17521507 (-)

Expression


Co-expression Network