LOC110523359 (LOC106569632)


Basic Information

Item Value
gene id LOC110523359
gene name LOC106569632
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17877617 ~ 17879225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601985.2
TCACTCCAACTCACAGCCCCCTATATATACTCCCAGCCCTGACacctgcagtacacacacactaccagacACAAGGACAAGACACAAGCTATCTTAAACAGCCTATATAGCCTGGTCATGAAGGTCCTCGTGGTGCTTGCGCTTGCTGTTTTCACTGGCTGCGATGCCAATGTTCTGTGGCAGGACCAGTCTAAGCAACAGCTGGACATTGTGAAAGACGCATTCTGGGACTATGTTGCCAAGGCAACACTCACGGCTGACGATGCCCTGCAGAAGATCAGACAGTCAGAGGTGGCACACGAAGTCAACACCATGATCACAGAGAGTGCTGATGCTGTGAGCCAGTACACTGTGGCCATGCGTGGTCAGGTGACTCCTCTGACTCAGGACCTGCTGGCCAAGCTTTCCCAGGAGGCTGAGCAGCTGAAGGCTCGTCTGGAGAAAGACCTGAGCGCCTTGACAGCCAAGCTGCAGCCCTACTCTGACGAGCTGAACGCGGACCTCCAGAGGCAGCTTGAGGAGATGAAGAGGGACGTGACCACCTACGCAGAGGCCCTGGACTCCGACGCGCTGAAGGCCTCTCTGCTCCAGAAGAGTGAGGAGCTGAAGGGAAGCCTGGAGAAGAGTGTGCAGCAGCTGCAGGCCCAGCTGGGCCCCTACACTGAGGAGCTGAAGCAGAAAATGGACCAGAACCTGGAGGAGTTCCAGAGGAGCATGATTCCTCTGACCCAAAGCTTCCAGACCCAGCTGACCCAGAGAACCCAGGAGGTCCAGCAGAACCTGGCCCCCTATGGAGAGAAGCTGACGAAGCTGGACCCATTAGCCCAGGACCTGAAGGCCCAACTGGCTGTTCTCTGGGACTCCTTCACCAAGAAGATCCAGTAATCGGACTGATTATACTTGGTCTCCTAGTCATTTTCCATCAAAGTCCAAAAGGGGCAATATGTAAATGTACTGGTACATACCACTACTGGGTTGTTTCACTGTATCAGTTATGGGACTCTCCATCTCCTGACCAATATCGACATGTGACTCAGGACTGTATTACAGTATTAACGAAGATGTTAGAAAATAAATGTAGGATTCTATCAACAATAGATTATTCACATCTGGTGTTGTTCTCTTGAGAAAGGTCTCAATTTCTCCAAGCAAACTTTCTCATATCTcagcatatttatttatttattgtcggTATTATGTGTGATTTCAATAAATGAAACTCAAGAATCTGAA

Function

NR:

description
apolipoprotein A-IV-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601985.2 True 1233 mRNA 0.50 4 17877617 17879225

Neighbor

gene id symbol gene type direction distance location
LOC110523357 LOC106569536 coding upstream 6025 17791860 ~ 17871592 (+)
tnpo1 LOC106569531 coding upstream 98907 17727521 ~ 17778710 (+)
LOC110523353 LOC106569485 coding upstream 634706 17235812 ~ 17242911 (+)
LOC110523352 LOC106569472 coding upstream 660431 17191416 ~ 17217186 (+)
LOC100136246 LOC106569430 coding upstream 729839 17126356 ~ 17147778 (+)
tmem174 LOC106569163 coding downstream 21268 17900493 ~ 17930164 (+)
btf3 btf3 coding downstream 161478 18040703 ~ 18047631 (+)
arhgef28a LOC106568988 coding downstream 188125 18067350 ~ 18177035 (+)
LOC110523365 LOC106568911 coding downstream 517103 18396328 ~ 18410126 (+)
LOC110523366 nsa2 coding downstream 536549 18415774 ~ 18422258 (+)
G373797 NA non-coding upstream 87770 17789516 ~ 17789847 (+)
G373796 NA non-coding upstream 88189 17789132 ~ 17789428 (+)
G373792 NA non-coding upstream 90866 17786537 ~ 17786751 (+)
G373790 NA non-coding upstream 97476 17778908 ~ 17780141 (+)
G373833 NA non-coding downstream 4125 17883350 ~ 17887537 (+)
G373848 NA non-coding downstream 33255 17912480 ~ 17954790 (+)
G374094 NA non-coding downstream 123599 18002824 ~ 18003153 (+)
G374095 NA non-coding downstream 130887 18010112 ~ 18010381 (+)
G374106 LOC106569011 non-coding downstream 154647 18033872 ~ 18034614 (+)
G373726 NA other upstream 169860 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 995432 16870434 ~ 16882185 (+)
G372373 NA other upstream 1139117 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 1656684 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 2082495 15791559 ~ 15795122 (+)
G376320 NA other downstream 2104036 19983261 ~ 19983848 (+)
G377022 NA other downstream 2712255 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 2864359 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 other downstream 2952033 20831111 ~ 20842676 (+)

Expression


Co-expression Network