LOC110523472 (gramd3)


Basic Information

Item Value
gene id LOC110523472
gene name gramd3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23896074 ~ 23906001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602182.2
ACTAAACGAGGCGGGGGTGTAAGTGAAGGCTATATTTATATTGTCCTGAAATAAAGTGATTAATGTCAGCGCTGTGCCATGTTTGGTTGCCACCAGATCAACCCACCCCCTCTTCCATGCCCTACCTCCACATAGTGTCCCGAGTATCGAACGATCTTCCCAAATTTAACCCCTCCTTGGCGTAGGACGGAGTCACTGccgaagttttttttttttacggagaAAGGGAACTGTTAAGGAAAGCGAATCCAGGCTGTCCCTCAAGAGATGGTACTTATGACCGAACAACCGGACAGAGATCTAACTCCGTTATCTACGCCAGAACAAGTTGTAAAGTCTGTCAAACCGGTCAGAAAAGATCCGAGGGGGATCCAATCGACGTCGGAGGCAGCgaatggaggagaggacaagCCCAGGAGGAGTGCCAGTGGGAGGTCTGCTGGGGACACTCAGGTGTCAATGGACACTGAGTCAGACCTCTCAGAGAGCAGGAAGAAACCACCCCTCATGAAATTTAAGGCTGTGGAGCTGCCTTCCCCGACGCAAACTCCAAGTGACGGTGAAACTAAGTTTGAAGGAAGAAAGAAATCCCAGTCCAGTCAGATATCCAAGACAAATGCCCAGTACCATAAAATATTCAAAGAAATCAGCAAGGATGAGTTACTGAAACAAAGTTACACCTGTGCACTGCAGAAAGACATGCTGTATCAGGGCAAAATGTTTGTGTCTGATAACTGGATATGTTTCCACTCCAAAGTCTTCGGCAGAGATACTAAGATTGCTATTCCTGTACTCTCTGTGACTCTTATCAAGAAGACAAAAACTGCCATTTTGGTTCCAAATGCACTCGTTATCACATCCACAAACAAGCGGCACGTATTTGCATCATTCCTATCCCGAGATACAACCTATAAACTTCTGAAATCCGTCTGCGTTCATCTGGATGGGGACAATACAGGGAGCAGCCTCATTACTTCCTCTGCTGAGAATAGCTTCATAGCCGATTGTCCCTCCTCACTTCCTCTGGATTTCTCTGGAGACTTCTCAGACCTGGATGGGGTTGTGTGCCAGAGGAGGCAAGACATGCTGGAGACCAGCAGCTCAGGCTCCCAGACCCCAGACTATGAGAAAATGACGGAGTTCCCCAGCATCCCAGACACGTTCCTGAGCGCGGTGAAGAATGTAGAGGTGGCGGTGCACGCAGACATCCACCTCCAGACCCCCAACCAAAAACACGGAGCCGCTCACCAGAACGGGCCGACCAAGCCTGCCCAGGGTGTTGTACACAAAGTGAAATCGCTACAGCCAGTGTCGTTGAACACCCTTCTACTCGTCTATTTGTTCCTAAACGTTGTGCATCACAGATCGCAGGTCGACTTCAATGCCGAAATCTATGGGGAGCTGTCTACAAACCTGTTCAAGCTAGAAAAGATTCAGAGAAATCTCCGTAAGCTACTTGAAGAGACCTGACTTAAGGACCCGTTGGTCGCCTCGCTGGACGGAAGTGGCACCTTCATAAAACGCTGGTGAAAACACTGCAGATCTGATCGGCAATCTGTTACCAAATAACAGACTGCCACTTTGGAAAAGAGACCATTTCTTAATTGTGCAATAGCAGTATCTTCCTTCTCTTTCTACTCAGGACAAAACCCATTATTTTGTGTCTGATAGCATGCCAGTGtaatcaagacatttcagcaaCTGTAGCTAGTTTGGGCTGAATCctaacttgaaactcacgcgctTAATAACGCAGAATTCTGCTTttaggggcaatctgcagttgctacattcaTTTTTGGACTGAATTAATGATATtcctcaagaatcaatgggtacataacTTATAAGtgcttcatgagcttagttcaactgtcgtaccccactagaacccaaaatataacctggttttactccaatatttgaaaacaaacactatatagcctaaAACATGGTTAATTATGACTGACATTGGTGGTCAGTCTTTGCATCCATAGCTTTGTCTAttaatttgagtggttacatttccccAGCCCCATGTGTTTCTTTACCGAAGCCGGGGTGGGAAAATgcattgtttcaactgctgattgccgcaTTAAATCATGCCTCGATGTCAATGGGACATTTCTGTGGAAATTTGAGTTGTGTTCAGGTTTCAAGGTATAGGATACAAACCTTAGCAAAGAGAAGCCATAAGCTTTAGCCTATGTAGTACTGTACCTGAGAAGCTTTTCAATATTAATGGGATGTTTTCAGGTATGAGTAGGTCCCAAGGACCCACCTATTTCAATGTTTTTCTATTAACATTTCAAAAATGGTCAGTCTTGTAATGCCTACTGTTCATGTGCCCATTTTGTTACAGGTATGAATTGCCAATAAAATATTTATAGTT
>XM_021602181.2
CTAAACGAGGCGGGGGTGTAAGTGAAGGCTATATTTATATTGTCCTGAAATAAAGTGATTAATGTCAGCGCTGTGCCATGTTTGGTTGCCACCAGATCAACCCACCCCCTCTTCCATGCCCTACCTCCACATAGTGTCCCGAGTATCGAACGATCTTCCCAAATTTAACCCCTCCTTGGCGTAGGACGGAGTCACTGccgaagttttttttttttacggagaAAGGGAACTGTTAAGGAAAGCGAATCCAGGCTGTCCCTCAAGAGATGGTACTTATGACCGAACAACCGGACAGAGATCTAACTCCGTTATCTACGCCAGAACAAGTTGTAAAGTCTGTCAAACCGGTCAGAAAAGATCCGAGGGGGATCCAATCGACGTCGGAGGCAGCgaatggaggagaggacaagCCCAGGAGGAGTGCCAGTGGGAGGTCTGCTGGGGACACTCAGGTGTCAATGGACACTGAGTCAGACCTCTCAGAGAGCAGGAAGAAACCACCCCTCATGAAATTTAAGGCTGTGGAGCTGCCTTCCCCGACGCAAACTCCAAGTGACGGTGAAACTAAGTTTGAAGGAAGAAAGAAATCCCAGTCCAGTCAGATATCCAAGACAAATGCCCAGTACCATAAAATATTCAAAGAAATCAGCAAGGATGAGTTACTGAAACAAAGTTACACCTGTGCACTGCAGAAAGACATGCTGTATCAGGGCAAAATGTTTGTGTCTGATAACTGGATATGTTTCCACTCCAAAGTCTTCGGCAGAGATACTAAGATTGCTATTCCTGTACTCTCTGTGACTCTTATCAAGAAGACAAAAACTGCCATTTTGGTTCCAAATGCACTCGTTATCACATCCACAAACAAGCGGCACGTATTTGCATCATTCCTATCCCGAGATACAACCTATAAACTTCTGAAATCCGTCTGCGTTCATCTGGATGGGGACAATACAGGGAGCAGCCTCATTACTTCCTCTGCTGAGAATAGCTTCATAGCCGATTGTCCCTCCTCACTTCCTCTGGATTTCTCTGGAGACTTCTCAGACCTGGATGGGGTTGTGTGCCAGAGGAGGCAAGACATGCTGGAGACCAGCAGCTCAGGCTCCCAGACCCCAGACTATGAGAAAATGACGGAGTTCCCCAGCATCCCAGACACGTTCCTGAGCGCGGTGAAGAATGTAGAGGTGGCGGTGCACGCAGACATCCACCTCCAGACCCCCAACCAAAAACACGGAGCCGCTCACCAGAACGGGCCGACCAAGCCTGCCCAGGGTGTTGTACACAAAGTGAAATCGCTACAGCCAGTGTCGTTGAACACCCTTCTACTCGTCTATTTGTTCCTAGTTAGTGTCCTTGTCTTGTCTTCATGTTACATGGCCTTCAAGATTGTGGCTCTTGAGAAGCGGCTGAACTCGTTGAGTTCTGTGGGGGAGTATGCACACAACGAAAACGTTGTGCATCACAGATCGCAGGTCGACTTCAATGCCGAAATCTATGGGGAGCTGTCTACAAACCTGTTCAAGCTAGAAAAGATTCAGAGAAATCTCCGTAAGCTACTTGAAGAGACCTGACTTAAGGACCCGTTGGTCGCCTCGCTGGACGGAAGTGGCACCTTCATAAAACGCTGGTGAAAACACTGCAGATCTGATCGGCAATCTGTTACCAAATAACAGACTGCCACTTTGGAAAAGAGACCATTTCTTAATTGTGCAATAGCAGTATCTTCCTTCTCTTTCTACTCAGGACAAAACCCATTATTTTGTGTCTGATAGCATGCCAGTGtaatcaagacatttcagcaaCTGTAGCTAGTTTGGGCTGAATCctaacttgaaactcacgcgctTAATAACGCAGAATTCTGCTTttaggggcaatctgcagttgctacattcaTTTTTGGACTGAATTAATGATATtcctcaagaatcaatgggtacataacTTATAAGtgcttcatgagcttagttcaactgtcgtaccccactagaacccaaaatataacctggttttactccaatatttgaaaacaaacactatatagcctaaAACATGGTTAATTATGACTGACATTGGTGGTCAGTCTTTGCATCCATAGCTTTGTCTAttaatttgagtggttacatttccccAGCCCCATGTGTTTCTTTACCGAAGCCGGGGTGGGAAAATgcattgtttcaactgctgattgccgcaTTAAATCATGCCTCGATGTCAATGGGACATTTCTGTGGAAATTTGAGTTGTGTTCAGGTTTCAAGGTATAGGATACAAACCTTAGCAAAGAGAAGCCATAAGCTTTAGCCTATGTAGTACTGTACCTGAGAAGCTTTTCAATATTAATGGGATGTTTTCAGGTATGAGTAGGTCCCAAGGACCCACCTATTTCAATGTTTTTCTATTAACATTTCAAAAATGGTCAGTCTTGTAATGCCTACTGTTCATGTGCCCATTTTGTTACAGGTATGAATTGCCAATAAAATATTTATAGTT

Function

symbol description
gramd3 Predicted to enable identical protein binding activity. Predicted to be located in cytoplasmic microtubule. Orthologous to human GRAMD2B (GRAM domain containing 2B).

NR:

description
GRAM domain-containing protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602182.2 False 2395 mRNA 0.45 13 23896074 23906001
XM_021602181.2 True 2499 mRNA 0.45 14 23896075 23906001

Neighbor

gene id symbol gene type direction distance location
oclna ocln coding upstream 12733 23873604 ~ 23883341 (+)
marveld2a mald2 coding upstream 23297 23861151 ~ 23872777 (+)
stard4 stard4 coding upstream 42521 23848218 ~ 23853553 (+)
LOC110523468 vamp5 coding upstream 54029 23838502 ~ 23844345 (+)
LOC118964576 NA coding upstream 148762 23737834 ~ 23747312 (+)
LOC110523473 LOC106567744 coding downstream 230 23906231 ~ 23929665 (+)
zmp:0000000846 LOC106567724 coding downstream 134144 24040145 ~ 24081954 (+)
LOC110523479 srek1 coding downstream 548071 24432802 ~ 24528819 (+)
LOC110523483 LOC106567618 coding downstream 729702 24635703 ~ 24644012 (+)
trnaa-ugc-9 NA coding downstream 798714 24704715 ~ 24704786 (+)
G380372 NA non-coding upstream 88138 23807214 ~ 23807936 (+)
G380336 NA non-coding upstream 130230 23763779 ~ 23765844 (+)
G380365 NA non-coding upstream 132551 23763303 ~ 23763523 (+)
G380363 NA non-coding upstream 133666 23762021 ~ 23762408 (+)
G380357 NA non-coding upstream 142597 23753221 ~ 23753477 (+)
G380431 NA non-coding downstream 42592 23948593 ~ 23948796 (+)
G380433 NA non-coding downstream 47058 23953059 ~ 23953354 (+)
G380434 NA non-coding downstream 48221 23954222 ~ 23982341 (+)
G380457 NA non-coding downstream 76450 23982451 ~ 23982673 (+)
G380461 NA non-coding downstream 86078 23992079 ~ 23992280 (+)
G380340 NA other upstream 154615 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 258983 23623921 ~ 23678038 (+)
lhfpl2a lhfpl2 other upstream 888787 22942205 ~ 23007315 (+)
G378868 NA other upstream 1266405 22602110 ~ 22629669 (+)
G381239 NA other downstream 781738 24687739 ~ 24776429 (+)
G382186 NA other downstream 1319441 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 2268944 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 2531618 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 2755837 26661838 ~ 26663613 (+)

Expression


Co-expression Network