LOC110523507 (LOC106567301)


Basic Information

Item Value
gene id LOC110523507
gene name LOC106567301
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26276691 ~ 26285224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977145.1
ATATTAGCTCATGAGGGAACGCTGGGCTGTTTTTCCATAGTAGCCTAATGCTGTGTCCGTGAAATGAGCATGTTTGCTCCAAGCATTACGTGGCCTCTGTCATTAATTGCCACAAACGATTTAGTCTATTGGATTAGATTGGAAGACAGAGACAGATGACCTTCGAGGCAGGGAGTAGAGTGACGCTGCTGTTTGACTTCTGGGATGTGCACGGACCCGCAGGGATGgtgctgtctgtgtttgtggTCCTCCTGTTGACGGTGTTCTACGAGCTGCTGAAGGTGTGGAAGGTCCAGCTGGGAAAGCCCTTAGAGCAGCCCACTCAGCCAGCCTTCCCACGgcctttcccccctcccctccactcctcagACTGCCAGGGAAGCAGCGCTGTGTTTGCCAGTAGCCTCTCAGAGTCTTCTCTGGCCCCCACGGAACAGGCTGTTCCCACTCCCTCCCCCATGAACAGATGGCGTCTCCATGGTATCCAGACAGCCATGCACATCCTGCAGGTGACTCTGGGCTACATACTGATGCTGTGTGTCATGTCCTACAACACCTGGATCTTCCTAGGGGTCATCTTGGGCTCGGTCCTGGGATACTTCATATGGTTCCCACTACTGAGTCAAATCTGATCAAACAATGGAATCCAAAGTTCTTTTCCTGGACTATAGAGCTACAGGGACTAGCTATCCCATACCTGTTGGTCAAAGATTTGATCTGAAGAGCATATCGTAGAAACTCCAATGGTGTATGTCATTCTGACTGTTGTGCACTGATGCGCAATAGATCTCCCTGTGACTGTGTCGCTTATCAAGTTACCTGAAGTGGAAGGTTGTACCAGTATTTCTTCCCTACTTATACATGATCTTAATTAAAAAGCAAGATGGAGACTTCCATATAGTGACACAGATGTACACAGAGTACAGCATAGTAGGAGTGATTGAGCCATGATACCTTTTTATCAAAGTTTTATGAAGTTTTACATTGTTCAAGCAAGGCAACTGTTACTATGTACTACACATCCACAGTCATCATTGTGACCAGGGCCCGTGAGTAGCTACAGGGCTTGAGTTCAATGTTGTCAACCTGTGGTTACTTGACTTAAGGCAGGGCTGCcaaaccctcttcctggagatctactgtcctgtaggttttcagtccaaccttTATAAAGAGTATCTGATTCAGCtggttaaggtcttgttgagcagctaattagtagaatcaggtgtgttaaattagggttggactgaaaacccacaggactgtagatctccaggaagagggttgggcagccctgaccTAAGGTTTGTCATTCTACCATTTCACTCCAAGGTCAGACTTCCAGCCAGCACTCTAGTCACAAGACAACATTGAGGAATTGCCACCTTGACAGCACAGAAGCATGTGATGGAGTATTGTAAACTCCATAGATACTGCATGCCAGGCTCATTGGGAAACAGATTGTTCTATTGCTCTGAAATACAGAGGAGAACAGAATCTGGGTCATGTTGTGTTTTTTAATCTCTTGCAAGAGAGCCACTGTAGAGAAACCAACCATTTGGTGCCTTTTATATCAGATgaatattttaattttaattagCTATTTTCTGTTGAGTTATCCAGTAGCCTAGTTTGAAAACATGGATGAATGCAACACTTTTTTTTCAATGCCCAATTGATAAAGTCAACTGAAAGTAGATAACGGACTACTCATACAAGGCTTCTAAAGTGGTATTGTTTAAAAAGTCCCTATTGAGAAATACCCATGTAGACATGTGCTTACTGTTGTTTTAGTGTCATTTTATTCTAATTATCAATAAATACCATCAACTAAG
>XM_021602259.2
ACATGGGGGCGGACTCATGCTGTTGATGGTAGCCTACAGCCCTGCGATCAAAACAAGTATAAGTTGAACGCAGCTAAAGTACtgaaaaaaaaatgtctgcagttcGCTGTCTTCTGTGATGGGGAGTCGAAGGACCTGAGGATTCCCCCATAAAATTCTTATTTGTCTGCTCAAGTTGATAAATCATGTCGATGACCTTCGAGGCAGGGAGTAGAGTGACGCTGCTGTTTGACTTCTGGGATGTGCACGGACCCGCAGGGATGgtgctgtctgtgtttgtggTCCTCCTGTTGACGGTGTTCTACGAGCTGCTGAAGGTGTGGAAGGTCCAGCTGGGAAAGCCCTTAGAGCAGCCCACTCAGCCAGCCTTCCCACGgcctttcccccctcccctccactcctcagACTGCCAGGGAAGCAGCGCTGTGTTTGCCAGTAGCCTCTCAGAGTCTTCTCTGGCCCCCACGGAACAGGCTGTTCCCACTCCCTCCCCCATGAACAGATGGCGTCTCCATGGTATCCAGACAGCCATGCACATCCTGCAGGTGACTCTGGGCTACATACTGATGCTGTGTGTCATGTCCTACAACACCTGGATCTTCCTAGGGGTCATCTTGGGCTCGGTCCTGGGATACTTCATATGGTTCCCACTACTGAGTCAAATCTGATCAAACAATGGAATCCAAAGTTCTTTTCCTGGACTATAGAGCTACAGGGACTAGCTATCCCATACCTGTTGGTCAAAGATTTGATCTGAAGAGCATATCGTAGAAACTCCAATGGTGTATGTCATTCTGACTGTTGTGCACTGATGCGCAATAGATCTCCCTGTGACTGTGTCGCTTATCAAGTTACCTGAAGTGGAAGGTTGTACCAGTATTTCTTCCCTACTTATACATGATCTTAATTAAAAAGCAAGATGGAGACTTCCATATAGTGACACAGATGTACACAGAGTACAGCATAGTAGGAGTGATTGAGCCATGATACCTTTTTATCAAAGTTTTATGAAGTTTTACATTGTTCAAGCAAGGCAACTGTTACTATGTACTACACATCCACAGTCATCATTGTGACCAGGGCCCGTGAGTAGCTACAGGGCTTGAGTTCAATGTTGTCAACCTGTGGTTACTTGACTTAAGGCAGGGCTGCcaaaccctcttcctggagatctactgtcctgtaggttttcagtccaaccttTATAAAGAGTATCTGATTCAGCtggttaaggtcttgttgagcagctaattagtagaatcaggtgtgttaaattagggttggactgaaaacccacaggactgtagatctccaggaagagggttgggcagccctgaccTAAGGTTTGTCATTCTACCATTTCACTCCAAGGTCAGACTTCCAGCCAGCACTCTAGTCACAAGACAACATTGAGGAATTGCCACCTTGACAGCACAGAAGCATGTGATGGAGTATTGTAAACTCCATAGATACTGCATGCCAGGCTCATTGGGAAACAGATTGTTCTATTGCTCTGAAATACAGAGGAGAACAGAATCTGGGTCATGTTGTGTTTTTTAATCTCTTGCAAGAGAGCCACTGTAGAGAAACCAACCATTTGGTGCCTTTTATATCAGATgaatattttaattttaattagCTATTTTCTGTTGAGTTATCCAGTAGCCTAGTTTGAAAACATGGATGAATGCAACACTTTTTTTTCAATGCCCAATTGATAAAGTCAACTGAAAGTAGATAACGGACTACTCATACAAGGCTTCTAAAGTGGTATTGTTTAAAAAGTCCCTATTGAGAAATACCCATGTAGACATGTGCTTACTGTTGTTTTAGTGTCATTTTATTCTAATTATCAATAAATACCATCAACTAAG

Function

NR:

description
probable low affinity copper uptake protein 2

GO:

id name namespace
GO:0035434 copper ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005375 copper ion transmembrane transporter activity molecular_function

KEGG:

id description
K14687 SLC31A2, CTR2; solute carrier family 31 (copper transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977145.1 False 1838 mRNA 0.45 4 26276691 26284155
XM_021602259.2 True 1874 mRNA 0.45 4 26276691 26285224

Neighbor

gene id symbol gene type direction distance location
LOC110523504 LOC106567272 coding downstream 44858 26191030 ~ 26231833 (-)
LOC110523492 LOC106567536 coding downstream 835337 25437411 ~ 25441794 (-)
LOC110522839 LOC106567541 coding downstream 1129857 24776769 ~ 25146834 (-)
LOC110523489 NA coding downstream 1272508 25002552 ~ 25004183 (-)
tnfrsfa LOC106567553 coding downstream 1452786 24781562 ~ 24823905 (-)
fut7 LOC106567339 coding upstream 85394 26370618 ~ 26381676 (-)
zgc:113162 LOC106566205 coding upstream 232906 26518130 ~ 26549900 (-)
LOC110523513 camkk2 coding upstream 265182 26550406 ~ 26572788 (-)
snrpd3l smd3 coding upstream 287708 26572932 ~ 26575046 (-)
LOC110523514 LOC106566259 coding upstream 307850 26593074 ~ 26624100 (-)
G383569 NA non-coding downstream 38999 26236864 ~ 26237692 (-)
G383550 NA non-coding downstream 79852 26196263 ~ 26196839 (-)
G383465 NA non-coding downstream 154993 26063638 ~ 26121698 (-)
G383373 NA non-coding downstream 350591 25925870 ~ 25926100 (-)
G383290 NA non-coding downstream 461036 25807503 ~ 25815655 (-)
G383630 NA non-coding upstream 75739 26360963 ~ 26447549 (-)
G383649 NA non-coding upstream 101106 26386330 ~ 26440282 (-)
G383696 NA non-coding upstream 174542 26459766 ~ 26492228 (-)
G383700 NA non-coding upstream 183963 26469187 ~ 26469512 (-)
G383702 NA non-coding upstream 196255 26481479 ~ 26482906 (-)
G383422 NA other downstream 277911 25996806 ~ 25998780 (-)
G380648 NA other downstream 2514884 23759039 ~ 23761807 (-)
G380610 LOC106567829 other downstream 2564800 23709798 ~ 23711891 (-)
LOC110522831 LOC106563032 other downstream 2720148 23488916 ~ 23556681 (-)
G385617 NA other upstream 1724043 28009267 ~ 28010077 (-)
G385769 NA other upstream 1929319 28214543 ~ 28214819 (-)
G386126 NA other upstream 2066551 28351775 ~ 28354745 (-)
G386222 NA other upstream 2205742 28490966 ~ 28491372 (-)
anapc2 LOC106566731 other upstream 2718459 28994099 ~ 29004755 (-)

Expression


Co-expression Network