LOC110523492 (LOC106567536)


Basic Information

Item Value
gene id LOC110523492
gene name LOC106567536
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25437411 ~ 25441794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602229.2
ATCAAATTGATAAATATCAATGTTCATCTGCAGAAAACATCTCGGAATCATGTCACGCTCAGCGGCCAAATCTCGTGACAAGAGTCGTGCTGCCAGTTTGGTTCTGGCACCTGCTCTTCCTCGCCCTGCCTCGGTCCAGAATGTGGAGACAGTGGACATTGTCCCAGGTCGCCTCACAGAAGCCGCCTGGGTCACCATGACAACACAGGACAACggggaggaggtggtggcggAGATCATGGGAGAGCTGGAGGCTGCAGTGATGGACAGGTGCTATCAGGTGTACCTGCAAAAACAGctgGTGCCGTTCACAGTAACCCGGGCCTATGAAAGCCTGGTGCAGATGTCTGACTGGCTGTTCCTGGCGAGGGATGAGGGTGAGGGGCGAGAGAGTGCCACTTTGTGGGGGGAGGATACAGAGCCTGAACCCTGTAAGAGCGACTCATGGGCCGAGGGCTGTGTTCCTGTCCGGTACACCAGTGTGagctcacacacacctcttttgCAGAAGTTGCTGGATTTGCACCTGGCAGAGTCTGCTGATCCATGGGACTCAGATACACAGAGCAAGCCCCAGTCTCCCAGTAGACAGGACAGCAAGCCCCAGTCTCCCAGTAGACAGGACAGCAAGCCCCAGTCTCCCAGTAGACAGGACAGCAAGCCCCAATCTCCCAGTAGACAGGACAGCAAGCTCCAGTCACCTACAAAGCCAGagcctccagacagagagagaacagtcctAGCAAAAAAAAGAATAGTGGATTCAACTGAACCTGAGAAGCCAGACAAGACAGAGAAGATAGCACCAGAGGAAGTCCAACCCTCACCTTACCTCACTGTAGCCACCTATAAAGCCCAGAGGAGGAGACAGTCTCAGACCCAACCAGGCGCACACAAGGCCCTACCACCACCTCTGAAGACCTACAAACCCTTATTCACCCCTAGTGAACCAGCCCAGCAGTACCAGAGCCTCTCTGTACCCCAACTTCAGGGGCATAGACCACGAGAGGTCCCAGTCCCTAGGAGACTGGACCCCGCTAGACTACCACAACACCATGTCTGGCCCGAGGTGGAGGTCCTGGAGCCTCGGCCCTCACACCGCTCAAAGGAGAGAATAGGGCCCAAAAACAGGGCCCCCCACCGGCCCAATCAGGACCATCACAGCATGGCACGCAGAGGCACCATCACCCCCCTGACTGCCCACACCCACCATGCTTTACCCAGCAAGACTCGGAAGAAAAGTCTCCACCATGGTGTCCAGCTACAGAGGCATGTGCTCCGAGGCAGTACCCAGCCAAGTGGCTCAACTGTGGGCTACACTCCGCTCTCCACTGGCCTCGATCTGGATACCATTGAGCTGGTGCCAGGAGTGACCATTGGGGACCCAGTATGTGGGACGGGGGAAAACAAGCCATTCTGGGTTTCCCGTCTGCCTGAGCTGAGGCCCATCAGAAGCAGCCTCCCGGCCATGTTGTGGTCCTTGAATCAGGTGGTGGGAGGGCATAGCCCTCGAGTCAGTGCCCCCAGTGGGAAACACTGGGCATGAGGAGCGATAGGAACCACTGCAGTCTCAATCACACTGCAGcctaatggactgtcatttgatGAATAGGTGCTGATTTGCTTTTATTTAATAAAGAGAAGATGTGAATTCCA
>TU434638
CTACAGAGGCATGTGCTCCGAGGCAGTACCCAGCCAAGTGGCTCAACTGTGGGCTACACTCCGCTCTCCACTGGCCTCGATCTGGATACCATTGAGCTGGTGCCAGGAGTGACCATTGGGGACCCAGTATGTGGGACGGGGGAAAACAAGCCATTCTGGGTTTCCCGTCTGCCTGAGCTGAGGCCCATCAGAAGCAGCCTCCCGGCCATGTTGTGGTCCTTGAATCAGGTGGTGGGAGGGCATAGCCCTCGAGTCAGTGCCCCCAGTGGGAAACACTGGGCATGAGGAGCGATAGGAACCACTGCAGTCTCAATCACACTGCAGcctaatggactgtcatttgatGAATAGATGTCCTGAGGTTTGATGTTAATGCAGTTCAATACTTGACCCCATGATGGCAGTGCGGATCATATTGTAACATTTGTCATCATAATGCTTCTGAGCAAATTCAGGAGTTGTTTGCTAGGGTGCACCGAGAATATGCGACGACAACAGATGACCAAGGAACATACATTAAACACCATTGTTCAGGTtcgggagagacgaaggttgaaagtcaatgcgtcctccgatacacaacccaactgctccgggcccaccacaggagttgttggtgcgcgatgagacaaggatatccctatgacgctaggccaattgtgagtcgccctacggacctcccggtcacggccggttacggcagagcctgggcgcgaacccagggtctctggtggcacagctggcgctgtgTACAACCACTGCGCTACCCGGGAGGCCCGAAAACGGAGTCTTAACAACCATTGAGAagagtatttaaaaaaacatctaTGACTAGTATCCCATTTTGGCAATTATTCTGAGTTGAGTTCCTGCATAGCGATAAGGGCACTGTTTTTCTGTTTTTACTGCAAGAAATACCAAAATATCCCCCAGCTAATTTTGCACTGTATGCATGAATTGTTTACAGACCAGCACACCAGGTACCGTATGTGG
>TU434637
GGAAACAATGTTGACGAGGCAAGAGAGAACAACATGAGTATGGGGTTCTAGAACTAAGCATTTTATGGAACTTTCTTGAGctgGTGCCGTTCACAGTAACCCGGGCCTATGAAAGCCTGGTGCAGATGTCTGACTGGCTGTTCCTGGCGAGGGATGAGGGTGAGGGGCGAGAGAGTGCCACTTTGTGGGGGGAGGATACAGAGCCTGAACCCTGTAAGAGCGACTCATGGGCCGAGGGCTGTGTTCCTGTCCGGTACACCAGTGTGagctcacacacacctcttttgCAGTTGCTGGATTTGCACCTGGCAGAGTCTGCTGATCCATGGGACTCAGATACACAGAGCAAGCCCCAGTCTCCCAGTAGACAGGACAGCAAGCCCCAGTCTCCCAGTAGACAGGACAGCAAGCCCCAGTCTCCCAGTAGACAGGACAGCAAGCCCCAATCTCCCAGTAGACAGGACAGCAAGCTCCAGTCACCTACAAAGCCAGagcctccagacagagagagaacagtcctAGCAAAAAAAAGAATAGTGGATTCAACTGAACCTGAGAAGCCAGACAAGACAGAGAAGATAGCACCAGAGGAAGTCCAACCCTCACCTTACCTCACTGTAGCCACCTATAAAGCCCAGAGGAGGAGACAGTCTCAGACCCAACCAGGCGCACACAAGGCCCTACCACCACCTCTGAAGACCTACAAACCCTTATTCACCCCTAGTGAACCAGCCCAGCAGTACCAGAGCCTCTCTGTACCCCAACTTCAGGGGCATAGACCACGAGAGGTCCCAGTCCCTAGGAGACTGGACCCCGCTAGACTACCACAACACCATGTCTGGCCCGAGGTGGAGGTCCTGGAGCCTCGGCCCTCACACCGCT

Function

NR:

description
uncharacterized protein C2orf81 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602229.2 False 1656 mRNA 0.56 3 25438468 25441354
TU434638 False 993 lncRNA 0.51 3 25437411 25438862
TU434637 True 882 TUCP 0.55 3 25439021 25441794

Neighbor

gene id symbol gene type direction distance location
LOC110522839 LOC106567541 coding downstream 291634 24776769 ~ 25146834 (-)
LOC110523489 NA coding downstream 434285 25002552 ~ 25004183 (-)
tnfrsfa LOC106567553 coding downstream 614563 24781562 ~ 24823905 (-)
LOC110522849 NA coding downstream 705830 24729725 ~ 24732638 (-)
LOC110522835 LOC106566050 coding downstream 708827 24725305 ~ 24729641 (-)
LOC110523504 LOC106567272 coding upstream 749676 26191030 ~ 26231833 (-)
LOC110523507 LOC106567301 coding upstream 835337 26276691 ~ 26285224 (-)
fut7 LOC106567339 coding upstream 929264 26370618 ~ 26381676 (-)
zgc:113162 LOC106566205 coding upstream 1076776 26518130 ~ 26549900 (-)
LOC110523513 camkk2 coding upstream 1109052 26550406 ~ 26572788 (-)
G382411 NA non-coding downstream 78685 25359213 ~ 25359783 (-)
G382395 NA non-coding downstream 103175 25335094 ~ 25335293 (-)
G382390 NA non-coding downstream 108592 25329545 ~ 25329876 (-)
G382335 NA non-coding downstream 116675 25321371 ~ 25321793 (-)
G382334 NA non-coding downstream 117124 25321143 ~ 25321344 (-)
G382495 NA non-coding upstream 10535 25451889 ~ 25452100 (-)
G383094 NA non-coding upstream 22934 25464288 ~ 25464494 (-)
G383098 NA non-coding upstream 29188 25470542 ~ 25497352 (-)
G383115 NA non-coding upstream 86585 25527939 ~ 25609294 (-)
G383139 NA non-coding upstream 87069 25528423 ~ 25528769 (-)
G380648 NA other downstream 1676661 23759039 ~ 23761807 (-)
G380610 LOC106567829 other downstream 1726577 23709798 ~ 23711891 (-)
LOC110522831 LOC106563032 other downstream 1881925 23488916 ~ 23556681 (-)
jmy LOC106568093 other downstream 2636217 22799696 ~ 22859199 (-)
LOC110523434 LOC106567989 other downstream 3259155 22177265 ~ 22179322 (-)
G383422 NA other upstream 555452 25996806 ~ 25998780 (-)
G385617 NA other upstream 2567913 28009267 ~ 28010077 (-)
G385769 NA other upstream 2773189 28214543 ~ 28214819 (-)
G386126 NA other upstream 2910421 28351775 ~ 28354745 (-)
G386222 NA other upstream 3049612 28490966 ~ 28491372 (-)
LOC110523492 LOC106567536 other upstream 159 25437411 ~ 25441794 (-)

Expression


Co-expression Network