RNA id: TU434637



Basic Information


Item Value
RNA id TU434637
length 882
RNA type TUCP
GC content 0.55
exon number 3
gene id LOC110523492
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25437411 ~ 25441794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAAACAATGTTGACGAGGCAAGAGAGAACAACATGAGTATGGGGTTCTAGAACTAAGCATTTTATGGAACTTTCTTGAGctgGTGCCGTTCACAGTAACCCGGGCCTATGAAAGCCTGGTGCAGATGTCTGACTGGCTGTTCCTGGCGAGGGATGAGGGTGAGGGGCGAGAGAGTGCCACTTTGTGGGGGGAGGATACAGAGCCTGAACCCTGTAAGAGCGACTCATGGGCCGAGGGCTGTGTTCCTGTCCGGTACACCAGTGTGagctcacacacacctcttttgCAGTTGCTGGATTTGCACCTGGCAGAGTCTGCTGATCCATGGGACTCAGATACACAGAGCAAGCCCCAGTCTCCCAGTAGACAGGACAGCAAGCCCCAGTCTCCCAGTAGACAGGACAGCAAGCCCCAGTCTCCCAGTAGACAGGACAGCAAGCCCCAATCTCCCAGTAGACAGGACAGCAAGCTCCAGTCACCTACAAAGCCAGagcctccagacagagagagaacagtcctAGCAAAAAAAAGAATAGTGGATTCAACTGAACCTGAGAAGCCAGACAAGACAGAGAAGATAGCACCAGAGGAAGTCCAACCCTCACCTTACCTCACTGTAGCCACCTATAAAGCCCAGAGGAGGAGACAGTCTCAGACCCAACCAGGCGCACACAAGGCCCTACCACCACCTCTGAAGACCTACAAACCCTTATTCACCCCTAGTGAACCAGCCCAGCAGTACCAGAGCCTCTCTGTACCCCAACTTCAGGGGCATAGACCACGAGAGGTCCCAGTCCCTAGGAGACTGGACCCCGCTAGACTACCACAACACCATGTCTGGCCCGAGGTGGAGGTCCTGGAGCCTCGGCCCTCACACCGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU434638 lncRNA downstream 159 25437411 ~ 25438862 (-) False LOC110523492
TU434551 lncRNA downstream 79238 25359213 ~ 25359783 (-) True G382411
TU434535 lncRNA downstream 103728 25335094 ~ 25335293 (-) True G382395
TU434530 lncRNA downstream 109145 25329545 ~ 25329876 (-) True G382390
TU434471 lncRNA downstream 117228 25321371 ~ 25321793 (-) True G382335
TU434645 lncRNA upstream 10095 25451889 ~ 25452100 (-) True G382495
TU435297 lncRNA upstream 22494 25464288 ~ 25464494 (-) True G383094
TU435301 lncRNA upstream 28748 25470542 ~ 25497352 (-) True G383098
TU435319 lncRNA upstream 86145 25527939 ~ 25609294 (-) True G383115
TU435344 lncRNA upstream 86629 25528423 ~ 25528769 (-) True G383139
XM_036977116.1 mRNA downstream 292187 24836561 ~ 25146834 (-) False LOC110522839
XM_036977117.1 mRNA downstream 292187 24836561 ~ 25146834 (-) False LOC110522839
XM_036977118.1 mRNA downstream 292187 24836561 ~ 25146834 (-) False LOC110522839
XM_036977119.1 mRNA downstream 292187 24836561 ~ 25146834 (-) False LOC110522839
XM_036977120.1 mRNA downstream 292187 24836561 ~ 25146834 (-) False LOC110522839
XM_036977142.1 mRNA upstream 749236 26191030 ~ 26231833 (-) False LOC110523504
XM_036977143.1 mRNA upstream 749236 26191030 ~ 26231833 (-) True LOC110523504
XM_036977145.1 mRNA upstream 834897 26276691 ~ 26284155 (-) False LOC110523507
XM_021602259.2 mRNA upstream 834897 26276691 ~ 26285224 (-) True LOC110523507
XM_021602263.2 mRNA upstream 928824 26370618 ~ 26381676 (-) True fut7
TU432686 other downstream 1677214 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 1727130 23709798 ~ 23711891 (-) True G380610
TU432173 other downstream 1882478 23547200 ~ 23556543 (-) True LOC110522831
TU431801 other downstream 2636770 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 3259708 22177265 ~ 22179313 (-) True LOC110523434
TU435637 other upstream 555012 25996806 ~ 25998780 (-) True G383422
TU437993 other upstream 2567473 28009267 ~ 28010077 (-) True G385617
TU438176 other upstream 2772749 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 2909981 28351775 ~ 28354745 (-) True G386126
TU438654 other upstream 3049172 28490966 ~ 28491372 (-) False G386222

Expression Profile