RNA id: TU434535


Basic Information

Item Value
RNA id TU434535
length 200
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G382395
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25335094 ~ 25335293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatcgcggTACTTCCCTGGGACAGGGGAAGGTCGGTGAGGAAGTCCACCGACAagtgtgaccacggccgttgtggaacggggaggggctgtaacctccctctaggcaggtgtcgaggagccttgctctgagcgcacactgagcaggaggagacataaaacctCACGTCCTTCGACAACGTCGGCTACCAGTATCTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434530 lncRNA downstream 5218 25329545 ~ 25329876 (-) True G382390
TU434471 lncRNA downstream 13301 25321371 ~ 25321793 (-) True G382335
TU434470 lncRNA downstream 13750 25321143 ~ 25321344 (-) True G382334
TU434452 lncRNA downstream 23256 25311543 ~ 25311838 (-) True G382316
TU434415 lncRNA downstream 49038 25285514 ~ 25286056 (-) True G382279
TU434551 lncRNA upstream 23920 25359213 ~ 25359783 (-) True G382411
TU434638 lncRNA upstream 102118 25437411 ~ 25438862 (-) False LOC110523492
TU434645 lncRNA upstream 116596 25451889 ~ 25452100 (-) True G382495
TU435297 lncRNA upstream 128995 25464288 ~ 25464494 (-) True G383094
TU435301 lncRNA upstream 135249 25470542 ~ 25497352 (-) True G383098
XM_036977116.1 mRNA downstream 188260 24836561 ~ 25146834 (-) False LOC110522839
XM_021602229.2 mRNA upstream 103175 25438468 ~ 25441354 (-) False LOC110523492
XM_036977142.1 mRNA upstream 855737 26191030 ~ 26231833 (-) False LOC110523504
XM_036977143.1 mRNA upstream 855737 26191030 ~ 26231833 (-) True LOC110523504
XM_036977145.1 mRNA upstream 941398 26276691 ~ 26284155 (-) False LOC110523507
XM_021602259.2 mRNA upstream 941398 26276691 ~ 26285224 (-) True LOC110523507
TU432686 other downstream 1573287 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 1623203 23709798 ~ 23711891 (-) True G380610
TU432173 other downstream 1778551 23547200 ~ 23556543 (-) True LOC110522831
TU431801 other downstream 2532843 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 3155781 22177265 ~ 22179313 (-) True LOC110523434
TU434637 other upstream 103728 25439021 ~ 25441794 (-) True LOC110523492
TU435637 other upstream 661513 25996806 ~ 25998780 (-) True G383422
TU437993 other upstream 2673974 28009267 ~ 28010077 (-) True G385617
TU438176 other upstream 2879250 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 3016482 28351775 ~ 28354745 (-) True G386126

Expression Profile