RNA id: XM_036977142.1


Basic Information

Item Value
RNA id XM_036977142.1
length 3799
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC110523504
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26191030 ~ 26231833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTGCAGCGATGTGAGGTGTGCACATTCGGTCGAGCAGAGAAACGAGAGGAATACtgcgagggagaaagagggagtcaAAGGGAGAGATTGAGAATACGGTCAAACACACAAGAGCATCATGGCACCCATAGGACTCAAGGCGGTGGTTGGTGAAAAGATTATGAATGATGTCATCAAGAAGGTGAAGAAGAAGGGGGAATGGAAGGCGCTGATTGTGGACCAGCTGAGCATGAGGATGCTGTCCTCCTGCTGCAAGATGACAGACATCATGTCAGATGGCATCACCAttgtggAGGACATAAACAAACGGCGAGAGCCTCTTCCCACCCTGGAGGCCATTTACCTGATTACCCCCACGGACAAGTCTGTGCAGACCCTGATTGGCGATTTCAAAGACCCCCATTCAGCCAAATACAAAGCAGCCCACGTCTTCTTCACTGACTCCTGCCCCGACCCACTGTTCAACGAGTTAGTAAAGAGCCGTGCTTCCAAATCCATCAAGACCCTGACTGAGATCAACATCGCCTTCCTGCCCTACGAATCACAGgtgtacTCTTTGGACAACCCGGATGCCTTCCAGAGTTTCTACAGCCCCCATAAGACCCAGCTGAAGAACCCAGTGATGGAGAGGCTGGCAGACCAGCTGGCCACCCTGTGTGCCACCCTGAAGGAGTACCCCGCTGTTAGATACCGAGGtgAGTACAAAGACAATGCCACCCTGGCCCAGCTGTTGCAGGACAAACTGGATGCCTACAAGGCTGATGACCCCACCATGGGAGAGGGTCCTGATAAGGCTCGTTCTCAGCTGATCATCCTGGACAGGGCATTTGACCCCGTCTCCCCTGTCCTGCATGAGCTCACCTTCCAGGCCATGGGCTACGACCTGCTGCCCATCGAAAACGACGTCTACAgataTGATTCCCCTGGGATGGGAGACACTTCTCAGAAGGAGGTCCTGCTGCATGAGGATGATGACCTGTGGGTGGGGCTCAGACACAAACATATCGCTGAGGTGTCCACGGAGGTGACACGCCAACTGAAGGACTTTTCTGCTAGCAAGAGGATGAACACTGCTGGAGAGAAGACCACCATGAGGGACCTCTCTCAGATGCTGAAGAAGATGCCTCAGTACCAGAAGGAGCTGAGCAAGTACTCCACTCACCTGCAGCTGGCTGAGGACTGCATGAAGCACTACCAGGGCACAGTGGACAAGTTGTGTCGTGTGGAGCAGGACCTGGCCATGGGTACAGACGCTGAGGGGGAGAAGATCAAGGACCCCATGAGGGCCATCGTGCCCATCCTGCTGGATGCCAATGTCACCACGCACGACAAGATCCGCATCATCCTCCTTTACATCTTCCTCAAGAACGGCATCACGGAGGAGAACCTGAACAAGCTCATCCAGCATGCTCAGATCCCACCTGAGGACAGTGAGATCATCACCAACATGGCCCACCTGGGTGTGCCCATCATCACAGATtcCACCCTTCGCAGAGGAAAGAAGCTGGACAGGAAGGAACGTGTGAGTGCGCAGACCTATCAGCTGTCTCGCTGGACACCACTGGTCAAGGACATCATGGAGGATGTTATTGAAGATAAGCTGGACACCAAGCACTACCCCTACATCTCTACCCGCTCCTCTGCCTCCTTCAGCAGCACTGcagtcagTGCCCGTTATGGCCACTGGCACAAGAATAAGACCCCAGGCGAGTACCGCACCGGGCCGCGCGTCATGGTCTTCATCATCGGAGGCGCGTCCTTCAGCGAGATGCGCTCTGCCTACGAGGTCACGCAGGCCAACGGGAAGTGGGAGGCTATCATTGGTTCcacccacaccatcacccccATCAAATTCTTAACGGACCTGCAGCACCCTGACTTCCGAGAGTCCACTAGGGTGTCCTTTGAGGAGCCAGACGCAGGCTCAGacgagtgagacagacagagagagggagggagggagagagaaatcacACTCTGACAAAGATCAACCCACGTCTTCACCCCCACCGCCCTCCTGGAACAGCTCAAGACCATGAACAAACCAGATGAGGAACCAGCAAGCTAAAACCACCCAGCCCCATCTATCTATCTCCTTTCCTCTACCCTACACACCCCCCAGTCATCCTCCCAGTCATCCTTCATGAATTGTGGAAACATCTCATCTTGCACGAGAAGAATAAGAATATAAAACAATGATAGCATTggtgaaaaaaatatatgttgaaACAGAAATAAAATCATGTTGCAAGTATTCTCATGTTTTACAATGGATGCaaataacagaacttatttaaaaaatgtttaaatatcAACTAAGGTAATTTGAAACTGAAAGTACCAAATGTAATATTGTATGCTATGAAACCTGCTAGAATGTGTAAAACGTAGAGGTTCTCTCTGTTTGTTCCCTCAGTTTATCTTATTGGTGTGATTTCTATTGGTAGTGGGTGGAGGAGGGATGCCTTACTTGAGTTGGTTGGCACTAGGAAAGTCAATGCAGTAAGATCATATCACTCAACATGCAATATAACTCATCCCTGTCCTATTAGGGGGAGAATCCTAGCTGGTCAAGACATTTGTATCAGTAGCATACAGGGATGGAACCTAAGGATTTTGGGCACTGACCAGCCAGGCTAGAAGACCGCAATTTTTACTAGTCCAAAATCTGTGCCATGCGATATTTGAAAATACAACATTTCACTAGCCGTTGGACTAGTTGGGCACATTTTCTACTAGCCCGGTCTGAAAAGTACTAGCCATAGGCTAGCAGGCTAGCTTAATTTCCATCCCTGATAGCATGCCTGAACATTGTGTGGACTGTTACTGTATATCCTTTAGTATGGCAATACTGAGAACAAGCCACCCAAGAGATCCTTCAGTGCTCTCTGTGAGTTAGACAGTAACAAACAGCCAAACTGACCCTAGGTCTGAGGATAGAGAAAAACGGGACTCTGTAAATAGCTACAGAATGGTAGAAGCATCCTTCCTCCAGCCATAAGACTGGAACTATTTACTCACCACATCCTTTTCCTTTTCTCTGGAGAGATTTCACGGTTGAGTGTCAAAAGGCCATTGCTTGCAGATGTTTAAAGAATAATCATAAAGGGCCGATTTGTATTTCAGTATTGTATCCTGTCACATTGTAAGTCTTATCATTGGTTAGTATCAAAATGTTTAACCGGGTCATTCACTGAGTAGTGTGTTGTGTATATGCCATATGTTGATGTTTTAGTGTCCCACTGTTGACTGGTGATGTTTCTGACTGTGCAGTAGTAAAAGATTTCCTTTAAAAAATGCCAATGTGAAGTCACGTGTTTGTGATGTTTTAGCTGTAGCTGTAGTGGTCAACAGGGAAAAGAACTAATATCTATATTTTGTTTGTCTGTCCGTTTTATCTTCTGGTGCATTTTAACTCTTCCAATGGTGAATGGCTTTGCAAAAGAAAATGTAACCCCGATATTTCTATCATTTTATTTCTCCATTTTTCCTCTCTATTGCCTGGCAAAACAGGTTGTATATTGATAGCACTATGCGTTTTCTGTTATGCcaacaattatatatattttttttattatcagTTGCTGTTGTAAAGGTTTCACTGTCTATTCAATTAATTTATATCCAAGTTATTTGTCAGAGGGAAGAAATATTAATAAATGAAACATAAGTCTGTCCTAAACCGGTTTAACTTATTGGGATTCTATATTTGCAAGTGTTGAAGCACAAACAAAAGTATACTTCATGTGTACCAATGTACTAAGGCTGTCTAATAAATTGGCTTCCATTACAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU435681 lncRNA downstream 69332 26063638 ~ 26121698 (-) True G383465
TU435585 lncRNA downstream 264930 25925870 ~ 25926100 (-) True G383373
TU435501 lncRNA downstream 375375 25807503 ~ 25815655 (-) True G383290
TU435494 lncRNA downstream 395628 25794445 ~ 25795402 (-) True G383284
TU435493 lncRNA downstream 399049 25791764 ~ 25791981 (-) True G383283
TU435788 lncRNA upstream 5031 26236864 ~ 26237692 (-) True G383569
TU435851 lncRNA upstream 129130 26360963 ~ 26447549 (-) True G383630
TU435871 lncRNA upstream 154497 26386330 ~ 26440282 (-) True G383649
TU435933 lncRNA upstream 227933 26459766 ~ 26492228 (-) True G383696
TU435937 lncRNA upstream 237354 26469187 ~ 26469512 (-) True G383700
XM_021602229.2 mRNA downstream 749676 25438468 ~ 25441354 (-) False LOC110523492
XM_036977116.1 mRNA downstream 1044196 24836561 ~ 25146834 (-) False LOC110522839
XM_036977145.1 mRNA upstream 44858 26276691 ~ 26284155 (-) False LOC110523507
XM_021602259.2 mRNA upstream 44858 26276691 ~ 26285224 (-) True LOC110523507
XM_021602263.2 mRNA upstream 138785 26370618 ~ 26381676 (-) True fut7
XM_036977148.1 mRNA upstream 286297 26518130 ~ 26532879 (-) False zgc:113162
XM_021602264.2 mRNA upstream 286297 26518130 ~ 26549900 (-) True zgc:113162
TU435637 other downstream 192250 25996806 ~ 25998780 (-) True G383422
TU434637 other downstream 749236 25439021 ~ 25441794 (-) True LOC110523492
TU432686 other downstream 2429223 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 2479139 23709798 ~ 23711891 (-) True G380610
TU432173 other downstream 2634487 23547200 ~ 23556543 (-) True LOC110522831
TU437993 other upstream 1777434 28009267 ~ 28010077 (-) True G385617
TU438176 other upstream 1982710 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 2119942 28351775 ~ 28354745 (-) True G386126
TU438654 other upstream 2259133 28490966 ~ 28491372 (-) False G386222
TU439211 other upstream 2771850 29003683 ~ 29004755 (-) True anapc2

Expression Profile