Gene
RNA
| Item | Value |
|---|---|
| gene id | G383283 |
| gene name | cacna1b |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 25791764 ~ 25791981 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cacna1b | Enables high voltage-gated calcium channel activity and protein C-terminus binding activity. Involved in modulation of chemical synaptic transmission and response to amyloid-beta. Predicted to be located in dendrite; membrane; and neuronal cell body. Predicted to be part of voltage-gated calcium channel complex. Predicted to be active in Schaffer collateral - CA1 synapse and glutamatergic synapse. Implicated in Lambert-Eaton myasthenic syndrome and dystonia 23. Biomarker of multiple sclerosis. |
| description |
|---|
| voltage-gated calcium channel subunit Cav2.2 variant I |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU435493 | True | 218 | lncRNA | 0.65 | 1 | 25791764 | 25791981 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523492 | LOC106567536 | coding | downstream | 350410 | 25437411 ~ 25441794 (-) |
| LOC110522839 | LOC106567541 | coding | downstream | 644930 | 24776769 ~ 25146834 (-) |
| LOC110523489 | NA | coding | downstream | 787581 | 25002552 ~ 25004183 (-) |
| tnfrsfa | LOC106567553 | coding | downstream | 967859 | 24781562 ~ 24823905 (-) |
| LOC110522849 | NA | coding | downstream | 1059126 | 24729725 ~ 24732638 (-) |
| LOC110523504 | LOC106567272 | coding | upstream | 399049 | 26191030 ~ 26231833 (-) |
| LOC110523507 | LOC106567301 | coding | upstream | 484710 | 26276691 ~ 26285224 (-) |
| fut7 | LOC106567339 | coding | upstream | 578637 | 26370618 ~ 26381676 (-) |
| zgc:113162 | LOC106566205 | coding | upstream | 726149 | 26518130 ~ 26549900 (-) |
| LOC110523513 | camkk2 | coding | upstream | 758425 | 26550406 ~ 26572788 (-) |
| G383279 | NA | non-coding | downstream | 6367 | 25785082 ~ 25785397 (-) |
| G383276 | NA | non-coding | downstream | 9212 | 25782341 ~ 25782552 (-) |
| G383273 | NA | non-coding | downstream | 11513 | 25779993 ~ 25780251 (-) |
| G383272 | NA | non-coding | downstream | 12566 | 25778930 ~ 25779198 (-) |
| G383216 | NA | non-coding | downstream | 53928 | 25685610 ~ 25737836 (-) |
| G383284 | NA | non-coding | upstream | 2464 | 25794445 ~ 25795402 (-) |
| G383290 | NA | non-coding | upstream | 15522 | 25807503 ~ 25815655 (-) |
| G383373 | NA | non-coding | upstream | 133889 | 25925870 ~ 25926100 (-) |
| G383465 | NA | non-coding | upstream | 271657 | 26063638 ~ 26121698 (-) |
| G383550 | NA | non-coding | upstream | 404282 | 26196263 ~ 26196839 (-) |
| G380648 | NA | other | downstream | 2029957 | 23759039 ~ 23761807 (-) |
| G380610 | LOC106567829 | other | downstream | 2079873 | 23709798 ~ 23711891 (-) |
| LOC110522831 | LOC106563032 | other | downstream | 2235221 | 23488916 ~ 23556681 (-) |
| jmy | LOC106568093 | other | downstream | 2989513 | 22799696 ~ 22859199 (-) |
| G383422 | NA | other | upstream | 204825 | 25996806 ~ 25998780 (-) |
| G385617 | NA | other | upstream | 2217286 | 28009267 ~ 28010077 (-) |
| G385769 | NA | other | upstream | 2422562 | 28214543 ~ 28214819 (-) |
| G386126 | NA | other | upstream | 2559794 | 28351775 ~ 28354745 (-) |
| G386222 | NA | other | upstream | 2698985 | 28490966 ~ 28491372 (-) |
