RNA id: TU432634


Basic Information

Item Value
RNA id TU432634
length 1074
RNA type TUCP
GC content 0.43
exon number 3
gene id G380610
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23709798 ~ 23711891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACTATTATATTGCTGTGAACAGAGGAACATCCACTATACAGGATAATATATTCATAGAGATTAAAAATCAAATTGGGACAGCAGGGAAACATTCAAACAAAACAGCAATCTTTTTTTTCCAGGCCTAACAGTCCATTAAGTGAAATAAGCACTGTATTTTGGTCTCCACAAATAAAACGAACAATATGTCCATATTAATAAACATtgcacagaaagacacacactaACCTTTACATAAAAACCTTGATACTACAAGCGATGAAGATGGGAAACAGAGACACTGCATAAGACCAAAAGAACCTCTGCCTGCTTTGACTAACCAACAGAGTGAATATGCTTTATATTTTACTGGACAAAGGTATACCTATTTGAATCATATACACATCTGTTGATTATATTTATAGAGAAAATAAACTTGTGGGTATAGCATTAAAGTTATGAGCAGGCAGGCCAAGAGGTTTGCACCATGCATGGGTGTAGTAGATGTGTCAATGAAGCATGTGTCAACTGATGGCAGTGCAATGAGAGTGTCTCAGTGTTTCCTTTGTTTAATAAGGGGTTGTGATGAGGGGGTTTAACCAGCAAAACGGTAATTGACATGGATCTCTGGCTTGATGTCACACACCATCTTAAGCAGGTTGCCCAGCACCCCTTCCCGGTTCTGCTGGTAGCTGGTCTGGATGCTACCCATCTTCCCCACAGTCTCTTTGTCCACCTCTACAGCAGAGTTACCATGGGATCCAAGAGCCGCAGCCTCCTTGGTCTTAAAATCCTTCTCCCTCTGCATACGGTACTGCTCAATCTCGGCCTGGGCTTCCTCCTTGGCCTGCTTCAGTCGACGGTTCTTACGTTTGCGGGCTTCTGCTACTTTTTCTGCAGCTCGTTTTTCAGCTTGCAAAAGCTGCTGGATACCCTGGGACTGGCTTGCCATTGTTTAGTTCGGAGAGAGATAGACGGACAAGAATATGTGGTTCCTCCAGCTGCTGGTCTGTGTTTGCAGCGAAGGTTGGTGAATTTACTGCAGTCAGCTGACAGCGCGTCACATATAGAAGGGATAACCCTGACACTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432214 lncRNA downstream 109793 23555190 ~ 23600005 (-) True G380223
TU432206 lncRNA downstream 165977 23543346 ~ 23543821 (-) True G380215
TU432205 lncRNA downstream 167398 23542113 ~ 23542400 (-) True G380214
TU432189 lncRNA downstream 188805 23520466 ~ 23520993 (-) True G380200
TU432176 lncRNA downstream 190424 23517588 ~ 23519374 (-) True G380187
TU432639 lncRNA upstream 17286 23729177 ~ 23735459 (-) True LOC110523464
TU432717 lncRNA upstream 41862 23753753 ~ 23754050 (-) True G380679
TU432718 lncRNA upstream 42308 23754199 ~ 23754486 (-) True G380680
TU432720 lncRNA upstream 44313 23756204 ~ 23756469 (-) True G380682
TU432692 lncRNA upstream 86539 23798430 ~ 23804454 (-) True LOC110523465
XM_021602157.2 mRNA downstream 9095 23678282 ~ 23700703 (-) True LOC110523461
XM_036977084.1 mRNA downstream 9353 23678282 ~ 23700445 (-) False LOC110523461
XM_036977083.1 mRNA downstream 111263 23590789 ~ 23598535 (-) True LOC110523460
XM_036977081.1 mRNA downstream 153117 23492201 ~ 23556681 (-) False LOC110522831
XM_036977082.1 mRNA downstream 162295 23491051 ~ 23547503 (-) False LOC110522831
XM_036977091.1 mRNA upstream 23030 23734921 ~ 23736928 (-) False LOC110523464
XM_021602164.2 mRNA upstream 23030 23734921 ~ 23736929 (-) False LOC110523464
XM_036977092.1 mRNA upstream 23030 23734921 ~ 23736929 (-) False LOC110523464
XM_021602159.2 mRNA upstream 35503 23747394 ~ 23751232 (-) False LOC110523462
XM_021602161.2 mRNA upstream 35503 23747394 ~ 23751232 (-) False LOC110523462
TU432173 other downstream 153255 23547200 ~ 23556543 (-) True LOC110522831
TU431801 other downstream 907547 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 1530485 22177265 ~ 22179313 (-) True LOC110523434
TU430076 other downstream 1917805 21791662 ~ 21791993 (-) True G378359
TU429645 other downstream 2680015 21029458 ~ 21029783 (-) True G377991
TU432686 other upstream 47148 23759039 ~ 23761807 (-) True G380648
TU434637 other upstream 1727130 25439021 ~ 25441794 (-) True LOC110523492
TU435637 other upstream 2284915 25996806 ~ 25998780 (-) True G383422
TU437993 other upstream 4297376 28009267 ~ 28010077 (-) True G385617
TU438176 other upstream 4502652 28214543 ~ 28214819 (-) True G385769

Expression Profile