RNA id: XM_036977083.1


Basic Information

Item Value
RNA id XM_036977083.1
length 2530
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110523460
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23590789 ~ 23598535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGAGACAGAGTGTGTATTGTACATGTTAGGACAGTCTCGCATACACTTCagaaatattttaaaaacaactacATGCTATAGGCCTTGTTTGATACAGTACTACAAACAGAAACAGCAGAGAAAGCAGCCACAGTTATACACAGATATGGCGTCCTCCAGCAGTTTCCTGTTGGAAGAGCAGTTTCTGTGTTCTATATGTCTGGATGTGTTCACTGAGCCTGTCACCATTCCATGTGGACACAACTTCTGTAAGGCCTGTATCAGAAAGTACTGGGAAAGAAATGACCTATGTCAGTGTCCAATGTGTAAAAACGTGTTTGATAGAAAACCAGATATTTTTGTCAATAATTTAATTTCTGAGATGGCTGCTCAGTTCAGGAAGTCAGTTCAAGTGAACACTACCAGCAGCCCAGACCAACGCCCTCCTGAGCCTGGAGAAGTGGCCTGTGACGCCTGCACTGGCACGAAGTTCAAGGCTCTGAAGTCCTGCCTGGAGTGTATGACCTCTTATTGTGAAACTCATCTGCAGCCGCATCAGATAGCCCCAGCCCTGAAGAGACACAAGCTAATTGCCCCTGTGGAGAACCTAGAAGGCAGGATGTGTAATGAGCACAACAAACTCCTGGATCTGTTCTGTAGGACTGACCAGACGTGTGTTTGTCTCTTGTGCATGAAAACAGAACACAAGACTCACTACACTGTCCCTCTAGAGAAAGAGTATAGACAGAGAAAAGTTCAGCTTGGGAAGATGGAGGCAGAAGTGCAGCAGATGATCCAGGAGCGACTTCAGAAGGTTCAGGATATAAAACACTTAGTAGAGATCAGcaagagagacgcagagggagagatagaagacAGCGCACAGGTCTTCATTGCTCTGGTGCGCTCCATTGAGAAAAGCCAGGCTGAGTTCATTGAGGTAgttgaggagaaggagaaagcaGCAGAGAGGAAGGCTGACGGGCTCATTAAAGAGCTGCAGCAGGAAATCGCTGAGCTACAGAAGAGAAGcactgagctggagcagctcGTACACACTGAGGACCAGCTCCACCTCCTCCAGAGCTCTCCATCCCTCAGCACCCTACCTCCCACCAAggactggtctgagatcagtaTTCACACCAGTCTGGGTGTGGGGAACCTGAGGCGAGCTATGTCTAAGCTGGAGGAGACACTCTGGAGTGATGTGAAGAAGTTGATGTATGATACTGAAATGAAGAGAATTCAGCAGTATGCAGTGGATGTGACTCTGGACCCTGATACAGCACATCCCAGTCTCAGCCTGTCTGAGGATAGGAAACAAGTGAGACATGTAGACAGGAGACAGAATCTCCCTGACAACCCAAATAGATTTTCCTTATGTACCGGTATCCTTGGAAAGAAGGGCTTCTCCTCAGGGAGATTCTACTATGAGGTGCAGGTCAAGGGGAAGACTGATTGGGATTTAGGAGTGACCAGAGAGTCCAGCAACAGGAAGGATTGCATTACACTGAGCCCTCAGAATGGATACTGGAGTGTGTGGCTGAGGAATAGGTATCAGTACCAGGCCAATACCTCTtctcctgtctgcctctccctgaGAGAGAAGCCTCAGAAGGTGGGGGTATTTGTGGATTATGAGGAGGGTCAAGTCTCCTTTTATGATGTAGAGGCCAGGTCTCATATCTACTCTTTCACTGGTTGCACCTTCACTGAGAAACTCTATCCATACTTCCGCCCTTACAAAAATAATGATGGTAAAAACTCTGCCCCTCTGATCATCTCTCTTGTCAGTCTCTGAGTTTTCTATTGTCAGGCTCTGACTTTTAAAGCCTCACTGCTGAGTGAGCTATAAAGATTTGTGTTTGTAAACGTTTGGATTTGGATGCTGTTATCACAGAATTCAAATAACTAAGTGGCAGTTACATTTGCAGAAACCGTACCGTATAAAGAATGTCAGTACATAGATATTTTGTATAACATGTGTATtcttacatgtacatatatatactGCAAGTGTCTAGGGATAGGCTGTGTGTACTGTGACCTGCTGTTTAGAATGTATGTGTTTGAATTTGTTGTGCAAATGTTATGTATTAATTATAATCTgtctgtgctgactgaagtgtGTATATTACGCTCATGCAGCATACACCCTTTGTGAATAGTGGATATTAAAGCCAATAGTCTACCACTGAATATGTTTTTATTAGTGACAGCATCACAATAAGACTAGTAAATGTACACAATACAGAGGTGAGTATATGAGCCAAGAAAAAATATTACACCATGAGAACAGGGAGGGAAGagaacagggaacagggaacagtagTTGCAGGGACTGTTCTGGTTTCTTCTTTTGTATGTTATACCGCAGGGGTACTCAAACTATTTGAGAAGGTCCGGTCACACAAATTTCCTAGGTGACAAAGGTCCAGATGGATATTGTCATTTATCGGCGTAGTAACAAACTCCCACCATGCGACCCCAAACTGTTCACCCCCCTCTTGTTGGCAGAGTGAGACATTtgcaatttcctgcaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432206 lncRNA downstream 46968 23543346 ~ 23543821 (-) True G380215
TU432205 lncRNA downstream 48389 23542113 ~ 23542400 (-) True G380214
TU432189 lncRNA downstream 69796 23520466 ~ 23520993 (-) True G380200
TU432176 lncRNA downstream 71415 23517588 ~ 23519374 (-) True G380187
TU432092 lncRNA downstream 77923 23456365 ~ 23512866 (-) True LOC110523459
TU432639 lncRNA upstream 130642 23729177 ~ 23735459 (-) True LOC110523464
TU432717 lncRNA upstream 155218 23753753 ~ 23754050 (-) True G380679
TU432718 lncRNA upstream 155664 23754199 ~ 23754486 (-) True G380680
TU432720 lncRNA upstream 157669 23756204 ~ 23756469 (-) True G380682
TU432692 lncRNA upstream 199895 23798430 ~ 23804454 (-) True LOC110523465
XM_036977081.1 mRNA downstream 34108 23492201 ~ 23556681 (-) False LOC110522831
XM_036977082.1 mRNA downstream 43286 23491051 ~ 23547503 (-) False LOC110522831
XM_021602156.2 mRNA downstream 130188 23456339 ~ 23460601 (-) False LOC110523459
XM_021602155.2 mRNA downstream 135425 23450567 ~ 23455364 (-) True LOC110523458
LOC110523457 mRNA downstream 154730 23426591 ~ 23436059 (-) True LOC110523457
XM_036977084.1 mRNA upstream 79747 23678282 ~ 23700445 (-) False LOC110523461
XM_021602157.2 mRNA upstream 79747 23678282 ~ 23700703 (-) True LOC110523461
XM_036977091.1 mRNA upstream 136386 23734921 ~ 23736928 (-) False LOC110523464
XM_021602164.2 mRNA upstream 136386 23734921 ~ 23736929 (-) False LOC110523464
XM_036977092.1 mRNA upstream 136386 23734921 ~ 23736929 (-) False LOC110523464
TU432173 other downstream 34246 23547200 ~ 23556543 (-) True LOC110522831
TU431801 other downstream 788538 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 1411476 22177265 ~ 22179313 (-) True LOC110523434
TU430076 other downstream 1798796 21791662 ~ 21791993 (-) True G378359
TU429645 other downstream 2561006 21029458 ~ 21029783 (-) True G377991
TU432634 other upstream 111263 23709798 ~ 23711891 (-) True G380610
TU432686 other upstream 160504 23759039 ~ 23761807 (-) True G380648
TU434637 other upstream 1840486 25439021 ~ 25441794 (-) True LOC110523492
TU435637 other upstream 2398271 25996806 ~ 25998780 (-) True G383422
TU437993 other upstream 4410732 28009267 ~ 28010077 (-) True G385617

Expression Profile