LOC110523434 (LOC106567989)


Basic Information

Item Value
gene id LOC110523434
gene name LOC106567989
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22177265 ~ 22179322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602118.2
GTGCTGCCAGTTGTATTGCGACCTCTTCTTATACAGCAGTGCTTTCGACCAGAAGGAGAAATGGCTGCAAGGTTATTGCTTCGCTCGGCCGTCAGGGCCGCTACAACTTGCCGGGCCGCCCCGGTCCCTGCTCTCACCCGCGGCATGGCGGTTGGTGGCATCCCCACCGACGAGGAGCAGGCCACTGGTCTGGAGAAGATAGTTATGAAGGCTGCGCAACAGGGCGCGGACCCCTACAGCATGTTGAAGCCCAAAGAGTATGCTGGCTCAAAGGCTGACCCCCATCTGGTGCCCTCCATCACTACCAAGAGGATTGTGGGCTGTGTCTGTGAGGAGGATAACACTGCAGTGGTGTGGTTCTGGCTCCATCAGGGTGATGCTCAGCGCTGTCCCTCATGTGGCTCCCACTACAAACTGGTGCCCCACGAGCTGCCCCACTAAAATACACCAACATACACCCTCTTATATACATAGACACATCACCTAGTACctttacatgacattacattcacTGAAAGATTCCAGCTTCTTTAGCATGAAGGGGGTTAGATGGTGATGTCAAATCTCAATGTTCTTTCAGGAAGTGTATTTGCATGGGGAGTTAGGTGTTTTAAATTAGAATGTTGGGCCTCTGTGTTTACCCTTTGATTTCTTTTAATCATGTGTTTGCTGTCCAATTTATCTTTATCTCATCCTAAcgtctacttgaaaatctatctAACCTGCTAACCTCAATGTCAGTCTGATCACAGGACCAGTTATTGTTTAAAACGTACCGAAGGCCTAGGCCTAATGGTGTGGGACGCAATGTTATTTTTCAAACAATTCCATTCAAACAGCAGTTTACGTtgatgtatgtactgtacacttGGTCTTATCAAATCAATAAAGTATACTCCTTAACTCCT
>TU431328
GTTGTATTGCGACCTCTTCTTATACAGCAGTGCTTTCGACCAGAAGGAGAAATGGCTGCAAGGTTATTGCTTCGCTCGGCCGTCAGGGCCGCTACAACTTGCCGGGCCGCCCCGGTCCCTGCTCTCACCCGCGGCATGGCGGTTGGTGGCATCCCCACCGACGAGGAGCAGGCCACTGGTCTGGAGAAGATAGTTATGAAGGCTGCGCAACAGGGCGCGGACCCCTACAGCATGTTGAAGCCCAAAGAGTATGCTGGCTCAAAGGCTGACCCCCATCTGGTGCCCTCCATCACTACCAAGAGGATTGTGGGCTGTGTCTGTGAGGAGGATAACACTGCAGTGGTGTGGTTCTGGCTCCATCAGGGTGATGCTCAGCGCTGTCCCTCATGTGGCTCCCACTACAAACTGGTGCCCCACGAGCTGCCCCACTAAAATACACCAACATACACCCTCTTATATACATAGACACATCACCTAGTACctttacatgacattacattcacTGAAAGATTCCAGCTTCTTTAGCATGAAGGGGGTTAGATGGTGATGTCAAATCTCAATGTTCTTTCAGGAAGTGTATTTGCATGGGGAGTTAGGTGTTTTAAATTAGAATGTTGGGCCTCTGTGTTTACCCTTTGATTTCTTTTAATCATGTGTTTGCTGTCCAATTTATCTTTATCTCATCCTAAcgtctacttgaaaatctatctAACCTGCTAACCTCAATGTCAGTCTGATCACAGGACCAGTTATTGTTTAAAACGTACCGAAGGCCTAGGCCTAATGGTGTGGGACGCAATGTTATTTTTCAAACAATTCCATTCAAACAGCAGTTTACGTtgatgtatgtactgtacacttGGTCTTATCAAATCAATAAAGTATACTCCTTAACTCCTCTTGCTGTTTCGGTGGTGATGTAGAATAGCGTGATGGTTTTGGTCAGGGGTGGGCAAAATACA

Function

NR:

description
Cytochrome c oxidase subunit 5B, mitochondrial precursor

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005740 mitochondrial envelope cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602118.2 False 908 mRNA 0.48 4 22177328 22179322
TU431328 True 962 TUCP 0.48 4 22177265 22179313

Neighbor

gene id symbol gene type direction distance location
LOC110523430 LOC106567981 coding downstream 89462 22067901 ~ 22087866 (-)
march5 march5 coding downstream 131836 22042781 ~ 22045492 (-)
LOC110523428 LOC105015193 coding downstream 139380 22033823 ~ 22037948 (-)
LOC110523426 LOC106567959 coding downstream 155768 22003337 ~ 22021560 (-)
LOC110523425 NA coding downstream 217886 21957792 ~ 21959442 (-)
LOC110523433 LOC106567986 coding upstream 353 22179675 ~ 22191846 (-)
LOC110516770 LOC106568012 coding upstream 45211 22224533 ~ 22231921 (-)
LOC110522825 LOC106568017 coding upstream 180926 22360248 ~ 22439554 (-)
LOC110523438 LOC106568028 coding upstream 356269 22535591 ~ 22539412 (-)
c5h2orf42 cssa01h2orf42 coding upstream 532411 22711733 ~ 22717155 (-)
G379518 NA non-coding downstream 5850 22171197 ~ 22171478 (-)
G379514 NA non-coding downstream 16595 22160506 ~ 22160733 (-)
G379512 NA non-coding downstream 20733 22156388 ~ 22156595 (-)
G379434 NA non-coding downstream 109642 22066983 ~ 22067686 (-)
G379433 NA non-coding downstream 111119 22064742 ~ 22066209 (-)
G379550 NA non-coding upstream 59825 22239147 ~ 22239393 (-)
G379552 NA non-coding upstream 65712 22245034 ~ 22245423 (-)
G379556 NA non-coding upstream 177742 22357064 ~ 22358086 (-)
G379698 NA non-coding upstream 324540 22503862 ~ 22506136 (-)
G379745 NA non-coding upstream 438090 22617412 ~ 22662248 (-)
G378359 NA other downstream 385335 21791662 ~ 21791993 (-)
G377991 NA other downstream 1147545 21029458 ~ 21029783 (-)
G377809 LOC106568602 other downstream 1472188 20704613 ~ 20705140 (-)
G377800 NA other downstream 1482620 20694096 ~ 20694708 (-)
G374786 NA other downstream 3618161 18558140 ~ 18559167 (-)
jmy LOC106568093 other upstream 620378 22799696 ~ 22859199 (-)
LOC110522831 LOC106563032 other upstream 1367878 23488916 ~ 23556681 (-)
G380610 LOC106567829 other upstream 1530476 23709798 ~ 23711891 (-)
G380648 NA other upstream 1579717 23759039 ~ 23761807 (-)
LOC110523492 LOC106567536 other upstream 3259699 25437411 ~ 25441794 (-)

Expression


Co-expression Network