LOC110523430 (LOC106567981)


Basic Information

Item Value
gene id LOC110523430
gene name LOC106567981
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22067901 ~ 22087866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602111.2
GCTCCTCCTGAGCCAAACCAATCATATTGTCTCCATCAGACTGAGGGCTCAACGACTAAGAGTGATTAGCAGACTCGGAGAGACAATCACAGCGACTCTAACATCTTGACGACCAATCAGCCAACTGAGGAGGGTATAGAAGGACTATAACTGCCTGATTATCCAGTCACCCTGTCCCCTCTACAGCCCCTTTAGCTGCCTCTAGCCCCCCATCAACTCCCAGGCTCTACCATTAAGCTCCCTCTAACAGCCCCCAAAACGCTTCTTCCACCATGACCAATAACAGTAGCTCCTCTGGCGTCTGGGAGAACTCTGATTGGTCAGAGTCAGCCCAGTGTCCACCCTCGGTGAGTGGAGCCACCTTCCTCATCGTGGCCTACAGCACGGTGATCGCAGTAGGGTTGCTAGGCAATGTGGGCCTGGTTTTCATCATCGGGCGGCAGAAGGAACTGCATAATGTCACCAACATTCTAATCGCCAACTTGTCCTGCTCCGACATCttgatgtgtgtggtgtgtttaccTGTCACCGTCATCTACACTCTGATGGACCGCTGGGTACTGGGGGAGGCACTCTGCAAGGTCACTCCGTTTGTACAGTGTGTGTCAGTGACGGTGTCTATTTTCTCCCTGGTGTTGATTGCGTTGGAGCGCCATCAGTTGATCCTGCACCCTACTGGCTGGTCCCCAGCAGCAGGCCACTCCTACCTGGCCGTAGGTCTCACCTGGTTGGTCGCCTGCTTCATATCACTCCCGTTCCTGTCCTACAACATTCTGACCGACAACCCCTTCCAGAACCTCACCCTGCCTGCCAACCCCTTcagagACCATGTGATCTGTTTGGAGAAATGGCCGACTGAAAGACACCGTCTGGCCTACACCACCTCCCTGCTGCTGTTCCAGTACTGCCTCCCTCTGTTACTAGTGCTGCTCTGCTACCTCCGCATATTCCTACGCCTACGTCGACGCAGGGACGTGGTGGAGCGGAGCCGGAAGGCCCGAGGAGCCCAGAGGATCAATGCTATGTTGGCGGCCATCGTTGCCGCCTTCGCCCTCTGCTGGCTGCCGCTCAACGTGTTCAACACGATATTCGACTGGGACCACCAGGCGCTGCCCGCCTGCCAGCATGATGCTGTGTTCTCCGCCTGCCACCTCACCGCCATGGCCTCTACATGTGTCAACCCTGTGgtgtacgGTTTCCTGAACAGTAACTTCCAGAGGGAGTTGAAGGCCCAGCTGCAGCGCTGCCACTGTGGATTGGGGGCGCCAGAGAGCTACGAGAATTTCCCGCTCTCCACCGTTGGCAGCGAGGGGATCACCAAGATGTCGATGCTGAACCGGGCAGGGTCAATGAGCATCGCTCCACCGCCACGGACTGAGCCCAGTGTTAACATATGCAGCTAACAGCTAGCCGACAGAGCTAGGGGCTAATGCTAATGGCTAAGAGCTAATGGACATTGTGTAATGTGTACAGCTGTCAGACACGATGTAAACAACAAGGGTAAAGTTCATATCAAGCAAGCAGCTAACAGACAGAACGCCCCAATGGACAGAACTAATAGAGAGCCGCTAACGCtaatagagagagaaagtggaacTAAGCAGCTGGACTGACTGTCAAAGACAGAGCTGGTTGGCCCCAGTCTCAGAGATCGGTCGATTTCTGAATTCCTACAAAGCATCGCAGGCCCTACAGAGTATACAGAATGCACTTCGCTAAAAGCAAACAAACAGATCTATACAGCTAATCGACAGAGCAGCTCATGGACAGATTGCACACATGCAGCTACGCTAGGTAGCAAACATCTGGAGAGACTGCagcagagagactgacagaaCCAGGGACTCGTGGGCTCTGTTTCAATGGTGATGATGTATTTCTGAGCTCATTCAGCTTGTCCCCAGAAAAACTGCCTTCACCAGATATTGACATCATCCTGGGGTGTTAAGCTGTTAAGCCAGGCAGAAAGATGGACAGactgtcagtcagacagtcaattCTGAAGTCAGGGATGCCTtgagatcaaatcaaaatcaaatcaaatttgattgacCACATActcatattttgcagatgttatcacagttgcagcgaaatgcttatattTGGTACTCcatcagtgcagtaatacctaacaatgcAAAACAAAAGACACAAATCCCTTAAAATGAATAAAGAGAAAAATGTAGAAATATCAGAGCCATGGTCAACGATCAGAATGTACATACATTGCCgttcaaaggttttagaacacctactcattcaaggctttttctttatttttacaattttctacat

Function

NR:

description
neuropeptide Y receptor type 1-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602111.2 True 2298 mRNA 0.51 5 22067901 22087866

Neighbor

gene id symbol gene type direction distance location
march5 march5 coding downstream 22409 22042781 ~ 22045492 (-)
LOC110523428 LOC105015193 coding downstream 29953 22033823 ~ 22037948 (-)
LOC110523426 LOC106567959 coding downstream 46341 22003337 ~ 22021560 (-)
LOC110523425 NA coding downstream 108459 21957792 ~ 21959442 (-)
LOC118964574 NA coding downstream 301760 21760374 ~ 21766141 (-)
LOC110523434 LOC106567989 coding upstream 89462 22177265 ~ 22179322 (-)
LOC110523433 LOC106567986 coding upstream 91809 22179675 ~ 22191846 (-)
LOC110516770 LOC106568012 coding upstream 136667 22224533 ~ 22231921 (-)
LOC110522825 LOC106568017 coding upstream 272382 22360248 ~ 22439554 (-)
LOC110523438 LOC106568028 coding upstream 447725 22535591 ~ 22539412 (-)
G379434 NA non-coding downstream 215 22066983 ~ 22067686 (-)
G379433 NA non-coding downstream 1692 22064742 ~ 22066209 (-)
G379438 NA non-coding downstream 7563 22059942 ~ 22060338 (-)
G379437 NA non-coding downstream 8463 22059201 ~ 22059438 (-)
G379436 NA non-coding downstream 9076 22058552 ~ 22058825 (-)
G379512 NA non-coding upstream 68522 22156388 ~ 22156595 (-)
G379514 NA non-coding upstream 72640 22160506 ~ 22160733 (-)
G379518 NA non-coding upstream 83331 22171197 ~ 22171478 (-)
G379550 NA non-coding upstream 151281 22239147 ~ 22239393 (-)
G379552 NA non-coding upstream 157168 22245034 ~ 22245423 (-)
G378359 NA other downstream 275908 21791662 ~ 21791993 (-)
G377991 NA other downstream 1038118 21029458 ~ 21029783 (-)
G377809 LOC106568602 other downstream 1362761 20704613 ~ 20705140 (-)
G377800 NA other downstream 1373193 20694096 ~ 20694708 (-)
G374786 NA other downstream 3508734 18558140 ~ 18559167 (-)
jmy LOC106568093 other upstream 711834 22799696 ~ 22859199 (-)
LOC110522831 LOC106563032 other upstream 1459334 23488916 ~ 23556681 (-)
G380610 LOC106567829 other upstream 1621932 23709798 ~ 23711891 (-)
G380648 NA other upstream 1671173 23759039 ~ 23761807 (-)

Expression


Co-expression Network