RNA id: XM_036977092.1


Basic Information

Item Value
RNA id XM_036977092.1
length 1456
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110523464
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23729177 ~ 23736929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCCTGTTCACATTTCACAGCGACATCTAGCGGAAAGGTCAAACACGGGCACTGCTGAAAACTACGTTACCCAGAAACCCTTCGTCAATTTATAGCGGATTCTACAGGGataggctagctagctactgctGTCCAAATAAACAACATTAACAAAATCGAACATTGTGGATATAATATGCTGCGCAGAAAGCCCACCCGTCTGGAATTGAAGTTGGATGACACTGAggagtttgagtgtgtcaagaaagAACTTGAGATTCGGAAAAAACAGAGCGATGAAGTGGATGTTGTTGGTGTGGCTATGTTTAGTAACATGGTGGGGGCCAGCGGTGGAACAGGGGATGGAAAGACACGGGAACAGATGATCAACGAGAGAATAAGCTACAAGCCCCATCCTAAACCCAACACCTTGCCCTCACTCTTTGGAAACCTGTAGTTTTAGGTTCCTAATAGGCACATTCACAAGACTACTCAAACTGTTGGCTCCACCAGTGTTGGTGTGTGGATGGCACAGTAACAATGCTATTGACATGGTCAGGGATACCTGTGGGCTTGCCTGAGGTCAGAATTCCCTTCACAAAGAAATGTGTAGTTTGAGGATCATGTTTTGCTTATAACACATATCTTCTAAAGTAATGTTGTTGCATTTACCTGAAATGTTATGACTTGCGATGCAAAGCGTGTGGCCTTTCTTTTGTACAACATGTTTCATGGGAGCTGTTGTAGTGGTTTCCCTCGATTACAAAAATCCAGACTTGGTAGTCCCAGGAAGGTGAAGGTAGCATCTTTGGGGCAAAATGGAATGGACTTGATAACTAATCAGTTATTACTTAGAATGGTATGATTGTAGTTTTATTGGCCTTCAAGGCTGCATTATGAGAATGCAACAGAATCAAACATACAGTTCTTGAATGATACCATTTATTACTTGTTTTCTCTAGATGATTACAGCACAGTAAATACGTCATACTATACAGACATGTCTGTGGACTTAACAGTCCAGGTAATGTTCACACTGTTGCTGCGCTGGAGTGGCAGTCAGACTCCCACTGCTGTTTTGGCCCATTAACTTCAACGCTCGAGTTGTACAGTAGACTATAATAATAAATCTTGATACATGATCCCATGTGGTAAAGCAGAAACAGTTATAATATGTTCAAGTATACACCAACTATTAATGTCCCTGGCTTGATTGTAATGTAATGAGAATGTGCGGCAGTTAAATCCAGTTATAGCAACTAGGAATTTGACCCTCAAACCAGGCACAGCACATCACTAAGGCTGTGTTTAGACAAGCAgctcaattctgatattttttccactaattggtcttttgaccaatcacatcagatctttctACAACCGATATTTTCCAGATctaattggtcaaaagaccaattaactgagtgtaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432214 lncRNA downstream 134916 23555190 ~ 23600005 (-) True G380223
TU432206 lncRNA downstream 191100 23543346 ~ 23543821 (-) True G380215
TU432205 lncRNA downstream 192521 23542113 ~ 23542400 (-) True G380214
TU432189 lncRNA downstream 213928 23520466 ~ 23520993 (-) True G380200
TU432176 lncRNA downstream 215547 23517588 ~ 23519374 (-) True G380187
TU432717 lncRNA upstream 16824 23753753 ~ 23754050 (-) True G380679
TU432718 lncRNA upstream 17270 23754199 ~ 23754486 (-) True G380680
TU432720 lncRNA upstream 19275 23756204 ~ 23756469 (-) True G380682
TU432692 lncRNA upstream 61501 23798430 ~ 23804454 (-) True LOC110523465
TU432733 lncRNA upstream 70289 23807218 ~ 23808214 (-) True LOC110523467
XM_021602157.2 mRNA downstream 34218 23678282 ~ 23700703 (-) True LOC110523461
XM_036977084.1 mRNA downstream 34476 23678282 ~ 23700445 (-) False LOC110523461
XM_036977083.1 mRNA downstream 136386 23590789 ~ 23598535 (-) True LOC110523460
XM_036977081.1 mRNA downstream 178240 23492201 ~ 23556681 (-) False LOC110522831
XM_036977082.1 mRNA downstream 187418 23491051 ~ 23547503 (-) False LOC110522831
XM_021602159.2 mRNA upstream 10465 23747394 ~ 23751232 (-) False LOC110523462
XM_021602161.2 mRNA upstream 10465 23747394 ~ 23751232 (-) False LOC110523462
XM_036977090.1 mRNA upstream 10465 23747394 ~ 23751232 (-) False LOC110523462
XM_021602158.2 mRNA upstream 10465 23747394 ~ 23752091 (-) True LOC110523462
XM_021602169.2 mRNA upstream 30693 23767622 ~ 23788427 (-) False LOC110523465
TU432634 other downstream 23030 23709798 ~ 23711891 (-) True G380610
TU432173 other downstream 178378 23547200 ~ 23556543 (-) True LOC110522831
TU431801 other downstream 932670 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 1555608 22177265 ~ 22179313 (-) True LOC110523434
TU430076 other downstream 1942928 21791662 ~ 21791993 (-) True G378359
TU432686 other upstream 22110 23759039 ~ 23761807 (-) True G380648
TU434637 other upstream 1702092 25439021 ~ 25441794 (-) True LOC110523492
TU435637 other upstream 2259877 25996806 ~ 25998780 (-) True G383422
TU437993 other upstream 4272338 28009267 ~ 28010077 (-) True G385617
TU438176 other upstream 4477614 28214543 ~ 28214819 (-) True G385769

Expression Profile