LOC110523462 (LOC106567435)


Basic Information

Item Value
gene id LOC110523462
gene name LOC106567435
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23747394 ~ 23752091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602159.2
ttgagaatcatacttaggtagcctgggtttcactgctggtttgtgggtgtttgttgccacacggtactgtttcggtttttgaaGATTACACGTTATCGTTTGTTTttgttatggacacttaccacgctgcatcttggtccgatacttactcctcttcagaagaAGAGGAGATATGCCGTtacgggaacattgcctttaaatttaaatCGCTCTATAGTATGGATCTTCTGCAGTATGGATTTAATCTTAACCTACTACAATAACCTAACCATAACATGGAGTCGGCCGCCTACACTCATCCTGAACATGCTGTATATATGTCTGATCTCTGCTACCATCTAGTGTCTCCAGTGCATCTCAACACCAATGAACAAGGAAAACAACCACTGGTTCCTTGTTCTAGTCCCTAACACCTTGGTGTTTTCAGATCTCTAGGAACTGGATAGATATGAGTTCCATTAAGTCCATTACCAATCACCATATTGCTTACACTTATCCATTCTCTTCAGATCTGAAAGTGGTGTCCTGGGAGAAGAGGCTAATATGGGCTCGGGGTCATTTGACTGGACAAGGCAATGTCACATTGTAAAGGTTACaaggacacctacagtatgtTGTGTATAGGCCCTGTGTGACTGGGTCTTATGAACTTCAGGCCTTACTCCGATGAGTGCTGGATGCTAGCGAATGGAGTGTAGGGTTTCTGCTTGTCTATTGTTGCCAGTGTAAGCTGATCTGTTACCTGCTCCCTCAATACAGGAATGCGAGCCTGGTTCGCCTGTGTGTTATCGTGTGCATGTTTGCGTGCACGTGTGTTTGATTGTGTACGTGGTGAGGCAGAGGGCCCATCCCATCAGCCCAATAGATGATAATAAGCTCTCTCTACCCCTGAGAACCCCATTGTTCTCTGTAGCCTCTTTAATATGTAACACGCTCCATTGACAGGCCTATGAGTGTGAGTTCACAGGGACGGGCAGCCTGAAATATTAAACGGCCTGAGGAGCCGCTGCAGGCTCAAATTGTTTGCTCATCATTAGAGCAGCTTCTGTGGAAGAGTAGAGCTGAACAACAGGGGAGATAAAGGGAGGAAGACCTACCCTCCAGGGGATTGTACTAGAGACAACAGGAACTAGGCTATGTAATAAGTTCATCACTCTACTATCTGACCCTATACTGTAGTGTCGATTTAGTTTGCCAGTAAAGGAGAACAACACTGGACTGGTCCTGGGACGGAGGTTGCTTTGAAAACAGAAGTCATGGCAGGTCTCCAGGGAACTACCAAGGACCTTTAGGAGGTTTGGAGGACAAACCAGAAGGATGGAGGAGGAAGCCCCAGTACCTGATGCCCCAGACTTTCATGCCCCAGAAGCCCCCGCAGAGGCCCCTGACATAGAGGCCCCAGAAGATCCCCCTGTAGAGAGTGGTGTGTCGGCCAGAGGAGTTCCACCATCCAGAGACAGCCGTAAACTGGACTGTATCATCTGCTTCTGTGCCTTCAACCTGGCTGAGAGGCTGCCACGCAAGCTCTACTGCGGCCACACCTTCTGCCAGGCCTGCCTGAGACGCCTTGACACCATCCTCaatgagcagCAGATGTGGATCCCCTGTCCACAATGCCGGCAGAACACTCCGCTACCTCGCGGGGGAGCTACAGCCCTGGACCTGGACCTAGCAGCCTTCCTGGGGGTCAAGGCTGACTTGGACAGCCAGAGGTCCAGCCCCCAGCAGGGAGGAAGAGAACTAGGCAACCAGCTGGAGCTAAAGCCCTCATTTGGGAAGCAGCCCATCATAGAGCAACCTCAGGCCACCTGGAACCATGGAGGACTGGCTGAGCCTCGCTTCCACAGGAGCCCTTGCTGCAGGCGCTTCTTCTGCTGCTGGTGGTGCTGCTAGGATGCAAGAGTTTAAAGCATCTGGGCAGCAGTATTCCCATTACAGTGCAAGCTGTAATTGATTATAGGAATGCCTGGGCTTCCAAGGCTAAAACAATGGAAAATATAGGTTAACTGCGTGATCTGACCAAGGAAAAATTTACTACTACTAAAAAAAAAACCACTACTGGCTAGAACAGTGTTCACGAGACTGACAAAGTTGTGGGGGACAACATTTTTTCCCCACTTCGTGGGAGAAAGAACGTTTCAGCACTCAAAATGGGACGCTGGATAAAGACCTCAATGACCTCACCTACAACCGAAAGACTCCTCTGCCTCCTTTCAACTATGCAGTTGGAGCTATTGGTACCTTGATTATTGAAAGTCCATTATTTTATACACACTTCATTGAGTTATAGTATAATTTATCTAGCCACTCTAGAATATCCCAttagtgttcaattgggttgagatctggtgactgatagtcatcaaaccattcagtgaccattcgtgccctgtggatggggcattgtcatcctaggGTAAGCCATGGTAGCTCAAATATGCCTGTCCAGCATTTTTATGCATGACCCTTAATTAATTTacaaaccacacctgtgtggaagcaccagCCTTCAATATACTTCGTATCCCTC
>XM_021602161.2
ttgagaatcatacttaggtagcctgggtttcactgctggtttgtgggtgtttgttgccacacggtactgtttcggtttttgaaGATTACACGTTATCGTTTGTTTttgttatggacacttaccacgctgcatcttggtccgatacttactcctcttcagaagaAGAGGAGATATGCCGTtacgggaacattgcctttaaatttaaatCGCTCTATAGTATGGATCTTCTGCAGTATGGATTTAATCTTAACCTACTACAATAACCTAACCATAACATGGTGAGAACTAAAGCTAAATATGCTACGAAGCATGTACAGAAGTTCAGAGACACCTGGAAATCTCTATTTGCAGAAGATTAAGATAAGCATCAGCTGTTTTCTTCCTTTACTCATCTTTCATAGACCTGTTTTACGGCGCAAGGGAGGAAGCCACTCAATAACAAACAATAACTTTCGAAAAACATATGTTGCAATGGTCAGTCTGAGTAAATGTTTCATTCTGTTCCCCCTAGGAGTCGGCCGCCTACACTCATCCTGAACATGCTGTATATATGTCTGATCTCTGCTACCATCTAGTGTCTCCAGTGCATCTCAACACCAATGAACAAGGAAAACAACCACTGGTTCCTTGTTCTAGTCCCTAACACCTTGGTGTTTTCAGATCTCTAGGAACTGGATAGATATGAGTTCCATTAAGTCCATTACCAATCACCATATTGCTTACACTTATCCATTCTCTTCAGATCTGAAAGTGGTGTCCTGGGAGAAGAGGCTAATATGGGCTCGGGGTCATTTGACTGGACAAGGCAATGTCACATTGTAAAGGTTACaaggacacctacagtatgtTGTGTATAGGCCCTGTGTGACTGGGTCTTATGAACTTCAGGCCTTACTCCGATGAGTGCTGGATGCTAGCGAATGGAGTGTAGGGTTTCTGCTTGTCTATTGTTGCCAGTGTAAGCTGATCTGTTACCTGCTCCCTCAATACAGGAATGCGAGCCTGGTTCGCCTGTGTGTTATCGTGTGCATGTTTGCGTGCACGTGTGTTTGATTGTGTACGTGGTGAGGCAGAGGGCCCATCCCATCAGCCCAATAGATGATAATAAGCTCTCTCTACCCCTGAGAACCCCATTGTTCTCTGTAGCCTCTTTAATATGTAACACGCTCCATTGACAGGCCTATGAGTGTGAGTTCACAGGGACGGGCAGCCTGAAATATTAAACGGCCTGAGGAGCCGCTGCAGGCTCAAATTGTTTGCTCATCATTAGAGCAGCTTCTGTGGAAGAGTAGAGCTGAACAACAGGGGAGATAAAGGGAGGAAGACCTACCCTCCAGGGGATTGTACTAGAGACAACAGGAACTAGGCTATGTAATAAGTTCATCACTCTACTATCTGACCCTATACTGTAGTGTCGATTTAGTTTGCCAGTAAAGGAGAACAACACTGGACTGGTCCTGGGACGGAGGTTGCTTTGAAAACAGAAGTCATGGCAGGTCTCCAGGGAACTACCAAGGACCTTTAGGAGGTTTGGAGGACAAACCAGAAGGATGGAGGAGGAAGCCCCAGTACCTGATGCCCCAGACTTTCATGCCCCAGAAGCCCCCGCAGAGGCCCCTGACATAGAGGCCCCAGAAGATCCCCCTGTAGAGAGTGGTGTGTCGGCCAGAGGAGTTCCACCATCCAGAGACAGCCGTAAACTGGACTGTATCATCTGCTTCTGTGCCTTCAACCTGGCTGAGAGGCTGCCACGCAAGCTCTACTGCGGCCACACCTTCTGCCAGGCCTGCCTGAGACGCCTTGACACCATCCTCaatgagcagATGTGGATCCCCTGTCCACAATGCCGGCAGAACACTCCGCTACCTCGCGGGGGAGCTACAGCCCTGGACCTGGACCTAGCAGCCTTCCTGGGGGTCAAGGCTGACTTGGACAGCCAGAGGTCCAGCCCCCAGCAGGGAGGAAGAGAACTAGGCAACCAGCTGGAGCTAAAGCCCTCATTTGGGAAGCAGCCCATCATAGAGCAACCTCAGGCCACCTGGAACCATGGAGGACTGGCTGAGCCTCGCTTCCACAGGAGCCCTTGCTGCAGGCGCTTCTTCTGCTGCTGGTGGTGCTGCTAGGATGCAAGAGTTTAAAGCATCTGGGCAGCAGTATTCCCATTACAGTGCAAGCTGTAATTGATTATAGGAATGCCTGGGCTTCCAAGGCTAAAACAATGGAAAATATAGGTTAACTGCGTGATCTGACCAAGGAAAAATTTACTACTACTAAAAAAAAAACCACTACTGGCTAGAACAGTGTTCACGAGACTGACAAAGTTGTGGGGGACAACATTTTTTCCCCACTTCGTGGGAGAAAGAACGTTTCAGCACTCAAAATGGGACGCTGGATAAAGACCTCAATGACCTCACCTACAACCGAAAGACTCCTCTGCCTCCTTTCAACTATGCAGTTGGAGCTATTGGTACCTTGATTATTGAAAGTCCATTATTTTATACACACTTCATTGAGTTATAGTATAATTTATCTAGCCACTCTAGAATATCCCAttagtgttcaattgggttgagatctggtgactgatagtcatcaaaccattcagtgaccattcgtgccctgtggatggggcattgtcatcctaggGTAAGCCATGGTAGCTCAAATATGCCTGTCCAGCATTTTTATGCATGACCCTTAATTAATTTacaaaccacacctgtgtggaagcaccagCCTTCAATATACTTCGTATCCCTC
>XM_036977090.1
ttgagaatcatacttaggtagcctgggtttcactgctggtttgtgggtgtttgttgccacacggtactgtttcggtttttgaaGATTACACGTTATCGTTTGTTTttgttatggacacttaccacgctgcatcttggtccgatacttactcctcttcagaagaAGAGGAGATATGCCGTtacgggaacattgcctttaaatttaaatCGCTCTATAGTATGGATCTTCTGCAGTATGGATTTAATCTTAACCTACTACAATAACCTAACCATAACATGGTGAGAACTAAAGCTAAATATGCTACGAAGCATGTACAGAAGTTCAGAGACACCTGGAAATCTCTATTTGCAGAAGATTAAGATAAGCATCAGCTGTTTTCTTCCTTTACTCATCTTTCATAGACCTGTTTTACGGCGCAAGGGAGGAAGCCACTCAATAACAAACAATAACTTTCGAAAAACATATGTTGCAATGGTCAGTCTGAGTAAATGTTTCATTCTGTTCCCCCTAGGAGTCGGCCGCCTACACTCATCCTGAACATGCTGTATATATGTCTGATCTCTGCTACCATCTAGTGTCTCCAGTGCATCTCAACACCAATGAACAAGGAAAACAACCACTGGTTCCTTGTTCTAGTCCCTAACACCTTGGTGTTTTCAGATCTCTAGGAACTGGATAGATATGAGTTCCATTAAGTCCATTACCAATCACCATATTGCTTACACTTATCCATTCTCTTCAGATCTGAAAGTGGTGTCCTGGGAGAAGAGGCTAATATGGGCTCGGGGTCATTTGACTGGACAAGGCAATGTCACATTGTAAAGGTTACaaggacacctacagtatgtTGTGTATAGGCCCTGTGTGACTGGGTCTTATGAACTTCAGGCCTTACTCCGATGAGTGCTGGATGCTAGCGAATGGAGTGTAGGGTTTCTGCTTGTCTATTGTTGCCAGTGTAAGCTGATCTGTTACCTGCTCCCTCAATACAGGAATGCGAGCCTGGTTCGCCTGTGTGTTATCGTGTGCATGTTTGCGTGCACGTGTGTTTGATTGTGTACGTGGTGAGGCAGAGGGCCCATCCCATCAGCCCAATAGATGATAATAAGCTCTCTCTACCCCTGAGAACCCCATTGTTCTCTGTAGCCTCTTTAATATGTAACACGCTCCATTGACAGGCCTATGAGTGTGAGTTCACAGGGACGGGCAGCCTGAAATATTAAACGGCCTGAGGAGCCGCTGCAGGCTCAAATTGTTTGCTCATCATTAGAGCAGCTTCTGTGGAAGAGTAGAGCTGAACAACAGGGGAGATAAAGGGAGGAAGACCTACCCTCCAGGGGATTGTACTAGAGACAACAGGAACTAGGCTATGTAATAAGTTCATCACTCTACTATCTGACCCTATACTGTAGTGTCGATTTAGTTTGCCAGTAAAGGAGAACAACACTGGACTGGTCCTGGGACGGAGGTTGCTTTGAAAACAGAAGTCATGGCAGGTCTCCAGGGAACTACCAAGGACCTTTAGGAGGTTTGGAGGACAAACCAGAAGGATGGAGGAGGAAGCCCCAGTACCTGATGCCCCAGACTTTCATGCCCCAGAAGCCCCCGCAGAGGCCCCTGACATAGAGGCCCCAGAAGATCCCCCTGTAGAGAGTGGTGTGTCGGCCAGAGGAGTTCCACCATCCAGAGACAGCCGTAAACTGGACTGTATCATCTGCTTCTGTGCCTTCAACCTGGCTGAGAGGCTGCCACGCAAGCTCTACTGCGGCCACACCTTCTGCCAGGCCTGCCTGAGACGCCTTGACACCATCCTCaatgagcagCAGATGTGGATCCCCTGTCCACAATGCCGGCAGAACACTCCGCTACCTCGCGGGGGAGCTACAGCCCTGGACCTGGACCTAGCAGCCTTCCTGGGGGTCAAGGCTGACTTGGACAGCCAGAGGTCCAGCCCCCAGCAGGGAGGAAGAGAACTAGGCAACCAGCTGGAGCTAAAGCCCTCATTTGGGAAGCAGCCCATCATAGAGCAACCTCAGGCCACCTGGAACCATGGAGGACTGGCTGAGCCTCGCTTCCACAGGAGCCCTTGCTGCAGGCGCTTCTTCTGCTGCTGGTGGTGCTGCTAGGATGCAAGAGTTTAAAGCATCTGGGCAGCAGTATTCCCATTACAGTGCAAGCTGTAATTGATTATAGGAATGCCTGGGCTTCCAAGGCTAAAACAATGGAAAATATAGGTTAACTGCGTGATCTGACCAAGGAAAAATTTACTACTACTAAAAAAAAAACCACTACTGGCTAGAACAGTGTTCACGAGACTGACAAAGTTGTGGGGGACAACATTTTTTCCCCACTTCGTGGGAGAAAGAACGTTTCAGCACTCAAAATGGGACGCTGGATAAAGACCTCAATGACCTCACCTACAACCGAAAGACTCCTCTGCCTCCTTTCAACTATGCAGTTGGAGCTATTGGTACCTTGATTATTGAAAGTCCATTATTTTATACACACTTCATTGAGTTATAGTATAATTTATCTAGCCACTCTAGAATATCCCAttagtgttcaattgggttgagatctggtgactgatagtcatcaaaccattcagtgaccattcgtgccctgtggatggggcattgtcatcctaggGTAAGCCATGGTAGCTCAAATATGCCTGTCCAGCATTTTTATGCATGACCCTTAATTAATTTacaaaccacacctgtgtggaagcaccagCCTTCAATATACTTCGTATCCCTC
>XM_021602158.2
ccgagccactacctgttcaccccgctatcatccagaaggcgagGAGTCGGCCGCCTACACTCATCCTGAACATGCTGTATATATGTCTGATCTCTGCTACCATCTAGTGTCTCCAGTGCATCTCAACACCAATGAACAAGGAAAACAACCACTGGTTCCTTGTTCTAGTCCCTAACACCTTGGTGTTTTCAGATCTCTAGGAACTGGATAGATATGAGTTCCATTAAGTCCATTACCAATCACCATATTGCTTACACTTATCCATTCTCTTCAGATCTGAAAGTGGTGTCCTGGGAGAAGAGGCTAATATGGGCTCGGGGTCATTTGACTGGACAAGGCAATGTCACATTGTAAAGGTTACaaggacacctacagtatgtTGTGTATAGGCCCTGTGTGACTGGGTCTTATGAACTTCAGGCCTTACTCCGATGAGTGCTGGATGCTAGCGAATGGAGTGTAGGGTTTCTGCTTGTCTATTGTTGCCAGTGTAAGCTGATCTGTTACCTGCTCCCTCAATACAGGAATGCGAGCCTGGTTCGCCTGTGTGTTATCGTGTGCATGTTTGCGTGCACGTGTGTTTGATTGTGTACGTGGTGAGGCAGAGGGCCCATCCCATCAGCCCAATAGATGATAATAAGCTCTCTCTACCCCTGAGAACCCCATTGTTCTCTGTAGCCTCTTTAATATGTAACACGCTCCATTGACAGGCCTATGAGTGTGAGTTCACAGGGACGGGCAGCCTGAAATATTAAACGGCCTGAGGAGCCGCTGCAGGCTCAAATTGTTTGCTCATCATTAGAGCAGCTTCTGTGGAAGAGTAGAGCTGAACAACAGGGGAGATAAAGGGAGGAAGACCTACCCTCCAGGGGATTGTACTAGAGACAACAGGAACTAGGCTATGTAATAAGTTCATCACTCTACTATCTGACCCTATACTGTAGTGTCGATTTAGTTTGCCAGTAAAGGAGAACAACACTGGACTGGTCCTGGGACGGAGGTTGCTTTGAAAACAGAAGTCATGGCAGGTCTCCAGGGAACTACCAAGGACCTTTAGGAGGTTTGGAGGACAAACCAGAAGGATGGAGGAGGAAGCCCCAGTACCTGATGCCCCAGACTTTCATGCCCCAGAAGCCCCCGCAGAGGCCCCTGACATAGAGGCCCCAGAAGATCCCCCTGTAGAGAGTGGTGTGTCGGCCAGAGGAGTTCCACCATCCAGAGACAGCCGTAAACTGGACTGTATCATCTGCTTCTGTGCCTTCAACCTGGCTGAGAGGCTGCCACGCAAGCTCTACTGCGGCCACACCTTCTGCCAGGCCTGCCTGAGACGCCTTGACACCATCCTCaatgagcagCAGATGTGGATCCCCTGTCCACAATGCCGGCAGAACACTCCGCTACCTCGCGGGGGAGCTACAGCCCTGGACCTGGACCTAGCAGCCTTCCTGGGGGTCAAGGCTGACTTGGACAGCCAGAGGTCCAGCCCCCAGCAGGGAGGAAGAGAACTAGGCAACCAGCTGGAGCTAAAGCCCTCATTTGGGAAGCAGCCCATCATAGAGCAACCTCAGGCCACCTGGAACCATGGAGGACTGGCTGAGCCTCGCTTCCACAGGAGCCCTTGCTGCAGGCGCTTCTTCTGCTGCTGGTGGTGCTGCTAGGATGCAAGAGTTTAAAGCATCTGGGCAGCAGTATTCCCATTACAGTGCAAGCTGTAATTGATTATAGGAATGCCTGGGCTTCCAAGGCTAAAACAATGGAAAATATAGGTTAACTGCGTGATCTGACCAAGGAAAAATTTACTACTACTAAAAAAAAAACCACTACTGGCTAGAACAGTGTTCACGAGACTGACAAAGTTGTGGGGGACAACATTTTTTCCCCACTTCGTGGGAGAAAGAACGTTTCAGCACTCAAAATGGGACGCTGGATAAAGACCTCAATGACCTCACCTACAACCGAAAGACTCCTCTGCCTCCTTTCAACTATGCAGTTGGAGCTATTGGTACCTTGATTATTGAAAGTCCATTATTTTATACACACTTCATTGAGTTATAGTATAATTTATCTAGCCACTCTAGAATATCCCAttagtgttcaattgggttgagatctggtgactgatagtcatcaaaccattcagtgaccattcgtgccctgtggatggggcattgtcatcctaggGTAAGCCATGGTAGCTCAAATATGCCTGTCCAGCATTTTTATGCATGACCCTTAATTAATTTacaaaccacacctgtgtggaagcaccagCCTTCAATATACTTCGTATCCCTC

Function

NR:

description
RING finger protein 224-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602159.2 False 2530 mRNA 0.48 4 23747394 23751232
XM_021602161.2 False 2760 mRNA 0.47 3 23747394 23751232
XM_036977090.1 False 2763 mRNA 0.47 3 23747394 23751232
XM_021602158.2 True 2295 mRNA 0.49 4 23747394 23752091

Neighbor

gene id symbol gene type direction distance location
LOC110523464 LOC106567795 coding downstream 10465 23729177 ~ 23736929 (-)
LOC110523461 hmdh coding downstream 46691 23678282 ~ 23700703 (-)
LOC110523460 NA coding downstream 148859 23590789 ~ 23598535 (-)
LOC110522831 LOC106563032 coding downstream 190713 23488916 ~ 23556681 (-)
LOC110523459 f2r coding downstream 286793 23456339 ~ 23512866 (-)
LOC110523465 LOC106563023 coding upstream 15531 23767622 ~ 23804521 (-)
LOC110523467 LOC106567778 coding upstream 54946 23807037 ~ 23828218 (-)
LOC110523469 NA coding upstream 81767 23833858 ~ 23844687 (-)
pik3r1 LOC106567700 coding upstream 355591 24107682 ~ 24161635 (-)
mast4 LOC106567657 coding upstream 502316 24254407 ~ 24426459 (-)
G380223 NA non-coding downstream 147389 23555190 ~ 23600005 (-)
G380215 NA non-coding downstream 203573 23543346 ~ 23543821 (-)
G380214 NA non-coding downstream 204994 23542113 ~ 23542400 (-)
G380200 NA non-coding downstream 226401 23520466 ~ 23520993 (-)
G380679 NA non-coding upstream 1662 23753753 ~ 23754050 (-)
G380680 NA non-coding upstream 2108 23754199 ~ 23754486 (-)
G380682 NA non-coding upstream 4113 23756204 ~ 23756469 (-)
G380610 LOC106567829 other downstream 35503 23709798 ~ 23711891 (-)
jmy LOC106568093 other downstream 945143 22799696 ~ 22859199 (-)
LOC110523434 LOC106567989 other downstream 1568081 22177265 ~ 22179322 (-)
G378359 NA other downstream 1955401 21791662 ~ 21791993 (-)
G380648 NA other upstream 6948 23759039 ~ 23761807 (-)
LOC110523492 LOC106567536 other upstream 1686930 25437411 ~ 25441794 (-)
G383422 NA other upstream 2244715 25996806 ~ 25998780 (-)
G385617 NA other upstream 4257176 28009267 ~ 28010077 (-)
G385769 NA other upstream 4462452 28214543 ~ 28214819 (-)

Expression


Co-expression Network