LOC110523459 (f2r)


Basic Information

Item Value
gene id LOC110523459
gene name f2r
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23456339 ~ 23512866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602156.2
GGGAGGCGTAAACTGTCTGAAAGCGACAGTTAGTTCTCTATGCAGCAACAGAGAAGGAGACCAAACATACATACAGGTTGATAATAATACGTGTTCAGATCTAGAATAAACGCTTTAGGCTACATTAGTAAATCTGTTCATCTTTATTGGACTTCATTACAGTTCTGCGAGAATGTTTTTCAAAGCCGTTCTATTCCTGGCAGGCGTGCATGCGGTTTCAGGCGTTTTTAACGGCACCTCCATCGTGAGGACCTTTGCCAGAAGGTTAGTCACGGAAGGGTCCGTGGTCACAGACGAGCCAATAGATCTAGACCTACTGGACTACTACCCAGACATAGACAGTAATGGGACTGGAGTTGGACTAAACAATGTGTCCGGACCGGGAGAGAGAGTTGGGTTTATAAATGGGTCCAGACTGAGACCATTGAAACTGGGCTCTGCCAGGAATGCTACAGAAGTCTGGTCTTACACCATCTCTGTTATGGCCAACAACTTCCTCACAGGCCACCTCTCTACCATCTTCATCCCGACGCTTTACACCTTCATCTTCCTCATCAGCGTGCCTCTTAACATTGTTGCCATGGTGACCTTTGCCCAACGGATCCGGCCCATGAAGCCAGCAGTGATCTACATGCTGAACCTGGCAGCCGCCGACCTGCTGTTCGCCCTGCTGCTGCCCTTCAAGATCGTCTACCACTACAATGGCAATGACTGGGGCTTCGGCGAGGGGTTGTGCCGCCTGGTCACTGCGGCCTTCTACTGCAACATGTACTGCTCCATCCTCCTCATGACCTGTGTCAGCGTGGACCGCCTGCTGGCAGTGGCCTACCCCATCAACTCCCTGTCCTGGAGGAGCCCCCGCAACGCCGCCTTGGCCTGTAGCGCcatgtggatcctggctgtgggtGGCTCGCTGCCTCTTGTCCTCTCACAGCAGACAGTCTACTACAACCCACTGGATATCACCACCTGCCATGACATCCAGGACCTGGAGCTGTTAGAGGAGCAATACGTCTTCTTCTTTCCTACACTCTCCTGCACCCTCTACTTCCTGCCGCTGTTCGTAATGGTGACCTGTTACTCCCGGGTGGTGCAGGTGCTCAACAAGGCTCCGTGCGGTGTTGTAGGCCGTTCAAGGCAGAAGGCGCGGGCTGTGGTGATGGCGGTCACCGTGCTTGTGGTGTTCGTGGTCTGTTTCACACCCACCAACTCCATTCTCCTCGCTCACTACCTCCAGATCGCTGGGCAGGTGGGTGGGGAGCCGGACGCTACCCACGTGGCCTACCTCGTGTCACTATGTTTGGGGAGCATCAGCTGCTGCCTGGACCCCCTGGTCTACTATTTTGGCTCGTCCCAGTGCCAGAGGCAGCTGGAGGGGGCGCTGGGATGCCAGGCGGTCGCTGAGGGAAGGAAGAGTCTGGCCTCGTCCTCTGGTTCCTCCAGGACCAGCACCAGGACCAGAATAAGCACGAGGACCAGCACTAGGATTACTAAGGTGGATACCTTCCAGGCCAGCCTCAGCAGCCAGTACAAGAAACTCCTGgtctgatggatggatggagacacagagagctgtttcTTTTTCACTGACAAAAATTTAAAAATATAGATTTAGTATATGCTGTATTTCCACTGTTTCAGACAGTGCAAGATGCTTCTGGTCTGACAGATAGACATGGACCAAAGCTAGGCTATTTCTGAGGAGAAAGAATGGATTTGGCTTGTATGATGAATTCAGTCAGACATTCATCCATAGGTCTGGGTTAGCTATGCCCAGCTGTAAATATGAAGAAGAGATATACACATTGTTTCAGACAGTGCAAGAAGCTGCTGTCATGATTGTCATGGCCCAAAGTTGTTTCTGACCTGTACACCACTACAGTACCAATAATATATATTTAGGGTAAGAGAAAAGGAAAATGTAAGTTTTGTGAAAATGTAATGGATAATACAATTTTTAATCTTGAAGCAGGTTTAAATTCCCCAAAACGATTTATTTTAAGTTTGATGGTCTGCGATAAGGGAATAACAAAGGAGTCTTTATTCAATCCTGTATTGTACCATTTCTTAAACGCTCACTGAACAATACAAGGAAATGCTTTCGAAGCAAGCTGAGTGAGGTCACTGCTATGCCTGCTGGCCATAGAGATATTTACTCAGCATTGTGAAATGTATAGCCTATGCACTATGTTGTCAATGTTGTATAGAAataccatacagtttattaggtacacccattcTTGTACCAGGTCGGACCCCCCTaagcctccagaacagcctgaaatATTTGGGATATAGAAAGGTTGCACAATTTGTAtaaagggacctaacgtgtgccaggaaaacattccccacaccattacaccacagccaccaccctgtaccattgacaccatacaggatggggccatgtactTTTACTGCTTACGCCAAATCTGGACTTTGCCATCATCATgatgcaacaggaaccgggattcatcggcccaggcaatgtttttccactcatcAATATTCCAGAGTTGGTGATTACGTGCCCACTGAAgccacttcttcttgtttttagctgataggagtggaacccagtatggtcgtctgctgcaatgtTTTTAGAAACTTTTACaaatgactcaagacatttcatctttTAATTTTTAATTCAATAAGTATTAAATTATTTTGTATGGCAAGcctaaaaatgtgcttaacatgtcacattacaagttgcatggactcactgtgtgcaatgcCAGTGTTTAACATGAATTTTGAATGAGTACCTCATAGGGGGGTCCGACCTGGTACAAGATGGATGTACctaatctgtaaggtccctcagtcaagcagtgaatttcaaacacagattcaaccacaaagaccagggaggtttttcaataccttgaaaaagaagggcactgattggtagatgggtaaacataataaaagcagacattgaatggtgtatcaatacacccagtgaTACAGGCGTAGGAGCGAAGCCGAGGTGGTGTACCTTAATAAACTGACCACTGTGTGTATATTATCACTCAAATAACTTTAGCTCACACTCATTATTACTAAATATTCCATTTGTGTGAATGTATAATCTATGCATTCAGAATTGGAAGAGCTGCTTGACTACTCAAATACCCAGACAAGTCGAGCAAAACGCGTCAGAGCAGGTACTATGCTGCGTACAGACACTTGCGCACGCAACGATAGAAATATAACGTATTGCGGTACTAATTTGAGAGTAAGAAGTGCTGTGATGCCCCCTATTGGTGTGAATTATACATCAAGGCAAGTACATTTACAGCACTTTGTCACAGTCCTGCATGTTGCATTACGTACAGCAGGTGGCGCTACATATCTATTTAGTACAAACAAGTATTCAGTGGAATTTATATTTGGTCTGGAGGATACATTAAATCAACAAAAATATTAAATGGTCTTAAAGATGGTATCTGTGCCATACTGTTACAGAACATTACAAAAAACAACTGGTAAATGTTTCAAATAAAGCTATCTGATTTTTTGTGTGTGATGTA
>TU432092
ggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatATATTTAGGGTAAGAGAAAAGGAAAATGTAAGTTTTGTGAAAATGTAATGGATAATACAATTTTTAATCTTGAAGCAGGTTTAAATTCCCCAAAACGATTTATTTTAAGTTTGATGGTCTGCGATAAGGGAATAACAAAGGAGTCTTTATTCAATCCTGTATTGTACCATTTCTTAAACGCTCACTGAACAATACAAGGAAATGCTTTCGAAGCAAGCTGAGTGAGGTCACTGCTATGCCTGCTGGCCATAGAGATATTTACTCAGCATTGTGAAATGTATAGCCTATGCACTATGTTGTCAATGTTGTATAGAAataccatacagtttattaggtacacccattcTTGTACCAGGTCGGACCCCCCTaagcctccagaacagcctgaaatATTTGGGATATAGAAAGGTTGCACAATTTGTAtaaagggacctaacgtgtgccaggaaaacattccccacaccattacaccacagccaccaccctgtaccattgacaccatacaggatggggccatgtactTTTACTGCTTACGCCAAATCTGGACTTTGCCATCATCATgatgcaacaggaaccgggattcatcggcccaggcaatgtttttccactcatcAATATTCCAGAGTTGGTGATTACGTGCCCACTGAAgccacttcttcttgtttttagctgataggagtggaacccagtatggtcgtctgctgcaatgtTTTTAGAAACTTTTACaaatgactcaagacatttcatctttTAATTTTTAATTCAATAAGTATTAAATTATTTTGTATGGCAAGcctaaaaatgtgcttaacatgtcacattacaagttgcatggactcactgtgtgcaatgcCAGTGTTTAACATGAATTTTGAATGAGTACCTCATAGGGGGGTCCGACCTGGTACAAGATGGATGTACctaatctgtaaggtccctcagtcaagcagtgaatttcaaacacagattcaaccacaaagaccagggaggtttttcaataccttgaaaaagaagggcactgattggtagatgggtaaacataataaaagcagacattgaatggtgtatcaatacacccagtgaTACAGGCGTAGGAGCGAAGCCGAGGTGGTGTACCTTAATAAACTGACCACTGTGTGTATATTATCACTCAAATAACTTTAGCTCACACTCATTATTACTAAATATTCCATTTGTGTGAATGTATAATCTATGCATTCAGAATTGGAAGAGCTGCTTGACTACTCAAATACCCAGACAAGTCGAGCAAAACGCGTCAGAGCAGGTACTATGCTGCGTACAGACACTTGCGCACGCAACGATAGAAATATAACGTATTGCGGTACTAATTTGAGAGTAAGAAGTGCTGTGATGCCCCCTATTGGTGTGAATTATACATCAAGGCAAGTACATTTACAGCACTTTGTCACAGTCCTGCATGTTGCATTACGTACAGCAGGTGGCGCTACATATCTATTTAGTACAAACAAGTATTCAGTGGAATTTATATTTGGTCTGGAGGATACATTAAATCAACAAAAATATTAAATGGTCTTAAAGATGGTATCTGTGCCATACTGTTACAGAACATTACAAAAAACAACTGGTAAATGTTTCAAATAAAG

Function

symbol description
f2r Enables thrombin-activated receptor activity. Acts upstream of or within circulatory system development; endothelial to hematopoietic transition; and negative regulation of hematopoietic stem cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; digestive system; hematopoietic system; mesoderm; and pleuroperitoneal region. Orthologous to human F2R (coagulation factor II thrombin receptor).

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602156.2 False 3545 mRNA 0.46 3 23456339 23460601
TU432092 True 1671 lncRNA 0.39 2 23456365 23512866

Neighbor

gene id symbol gene type direction distance location
LOC110523458 LOC106568234 coding downstream 975 23450567 ~ 23455364 (-)
LOC110523457 LOC106568234 coding downstream 20280 23426591 ~ 23436059 (-)
s100z s100z coding downstream 41849 23409397 ~ 23414490 (-)
aggf1 aggf1 coding downstream 95846 23352028 ~ 23360493 (-)
pde8b LOC106568179 coding downstream 104933 23255224 ~ 23351406 (-)
LOC110522831 LOC106563032 coding upstream 30450 23488916 ~ 23556681 (-)
LOC110523460 NA coding upstream 130188 23590789 ~ 23598535 (-)
LOC110523461 hmdh coding upstream 217681 23678282 ~ 23700703 (-)
LOC110523464 LOC106567795 coding upstream 274320 23729177 ~ 23736929 (-)
LOC110523462 LOC106567435 coding upstream 286793 23747394 ~ 23752091 (-)
G380099 NA non-coding downstream 115156 23340903 ~ 23341183 (-)
G380097 NA non-coding downstream 119606 23336531 ~ 23336733 (-)
G380085 NA non-coding downstream 145826 23308971 ~ 23310513 (-)
G380037 NA non-coding downstream 289998 23166055 ~ 23166341 (-)
G380000 NA non-coding downstream 298524 23154306 ~ 23157815 (-)
G380187 NA non-coding upstream 56987 23517588 ~ 23519374 (-)
G380200 NA non-coding upstream 59865 23520466 ~ 23520993 (-)
G380214 NA non-coding upstream 81512 23542113 ~ 23542400 (-)
G380215 NA non-coding upstream 82745 23543346 ~ 23543821 (-)
jmy LOC106568093 other downstream 654088 22799696 ~ 22859199 (-)
LOC110523434 LOC106567989 other downstream 1277026 22177265 ~ 22179322 (-)
G378359 NA other downstream 1664346 21791662 ~ 21791993 (-)
G377991 NA other downstream 2426556 21029458 ~ 21029783 (-)
G377809 LOC106568602 other downstream 2751199 20704613 ~ 20705140 (-)
G380610 LOC106567829 other upstream 249197 23709798 ~ 23711891 (-)
G380648 NA other upstream 298438 23759039 ~ 23761807 (-)
LOC110523492 LOC106567536 other upstream 1978420 25437411 ~ 25441794 (-)
G383422 NA other upstream 2536205 25996806 ~ 25998780 (-)
LOC110523465 LOC106563023 coding upstream 254756 23767622 ~ 23804521 (-)
G380223 NA non-coding upstream 42324 23555190 ~ 23600005 (-)

Expression


Co-expression Network