LOC110523457 (LOC106568234)


Basic Information

Item Value
gene id LOC110523457
gene name LOC106568234
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23426591 ~ 23436059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110523457
TGGTACCCTACCTCTTCAGTTGACTGTAGCCAGCAGATTGACCAATTTGCTTACAATTGCACTAGGGTCAGACAGGTTTACTGTGTCGATTAAGATACAGAAAAACTAGGATAAAGGGACAATTCAGAGTGCAGCGCATTTGtcatccctggattgaggtacATTTTCTGAGACATATCTCACGCTGGCACTGCTGGGTCTTAATCTATATAGGAAGCCTGTCTGACCCTAGTGCAGCTATAAGCAAGCGCGGCGGATCTGCTGGCTACAGTTGACTTCAAAGTTGCACAGACAAAAGGAATACACAAACGCTTGAATCAGCATTCAACACTCTTCGTACATCGCAGGTAGATTATTGCTGGAAAGTTTTGTGGAAGTTAACATGAGTTTCAAGCGGCATTGGTTGAATCTTGTGTTTTTATTGGCCTGCGCCGAACTATGTCTGTCTCAGAAAAATGAGCGGTTTAATGCTGGCGTTGAAGACCGAGGCTTCACGGGGGAGGAGACCGCGGCGGGGGTGCAGGTCTCCCTGGAGGCCTGCATGGTTCTGGACagtcatctgaccactgtgttcTTCCCCATTGTCTACATAGTGGTGTTTGCTGTGGGGCTGCCCACCAACGCCATGGCCATCTGGGTCTTCCTGTTCAGGACCAAGAAGAAGCACCCTGCCGCCATCTACATGACCAACCTGGCTCTGTCTGACCTGCTCTTTGTCATCTGGACGCCTCTGAAGATCGCCTACCACTTCAACGGTAACGACTGGATCTATGGAGAGAGGCTGTGTAAAGTCCTGGTGGGCTTCTTCTATGGGAACATGTACTGCTCCATCCTCTTCATCACCTGTATCAGTGTCCAGCGCTACTGGGCCATTGTTTACCCCCTCTCCCAGGATTGTAGGAACAACCATGTAGCCATCGGTGTCTCGGTCGCAGTCTGGGTGGGGGTCTGGCTGCTGaccacccctctctacctctacgaCCAGACAGTCAAGGTGACCAACCTCAACATCATCACCTGCCACGACGTCACCCGGCCAAGCCAGAATAGCATGGCTGCTGGCTTCTTCCTGACCATGGGAACCCTGGGATTTGTAGTTCCCACCGTGTTGTGCGTGGTGGTTAACGTTCTGATGCTCAAGTCCCTGAGGAACTCAATGACGGACGCCAGCATCACCAAGAATCGGCGCAAGGCTGTGGTGCTCATCATTACTGTGCTGATCATTTTCCTGGTCTGTTTCACCCCCAGTAACATCATGATGCTGGTGACCTACTCTCTCCTGCTGGCTCAAGTAGTACACAATGACTACGGCTTCTACATCACCACCCTGTGTCTGGCCAGCCTCAACAGCTGTGTGGATCCATTCATCTACTACTTCATCTCAGAGGAGTTCAGGGAGCAAGTAAAGAACACGCTGAGGTGCCGGAGCCAGAGGGCATGATGAGGATCTCGTTCACTGCTCTGAAGTACTTCAAGATGAGTAACACCATCcaggtttggggtcaattccagtcaattcagtaAGTACTGATTAGGAAAATGTGGAATTGGATTGGTtgatttggtttactttctgaattgtctggcattaaaatggaattgaccccaaccttggTACCTGCACCTCAGACTCAGGGAACACACAGAGCAGCTATGTTTAGGGGGGTTGTCATGTGGAGATCAAAGTTGGCTGTACTGATGTTTTTAATGAACTGGACAGGTTACAGGGAATACCGGGTTGGTCTCAAATACTAGGTGTCTTTAACctaacattttgttttcatcatcatcaatggagagagagatgagatgcaaCCCCAGACTACTTCATATTATGTGCTTGTTATAttgcctcctctcccctcatacAATTATAGTGCAGATTTTGTTGGTTTTATCTAGAAAACAAAATCAGAAAGAGTGTTACTGATCCATCCTCCACATTTAGACACTCAAAGATGTCCATTATGTTTGTTCCAGCACTGAGCTCTCTGAAACTGTTAACTTAGTTTTTAGTGCCCAGCACTGACCCTTCACTTCTGGCAACAGGTATTGTTCTTTATCAAGTGAGCCATACATGTTTATACTGTAAAGATATAATTCAAtcgtattattatatgtaatAGAAAGCGAAGGGTTAGAAGAAGCCttcataaccaacccataaagtaaaatgttatgaccagctatgtaaactttaacatagatttatcctgcaatagatgttgttcaattggtaacatacatttttgtcttcttctaatgcctcgtaagggaaagtaatctaaaagtaacagaatgtaatcagattacgttactgagtttgggtaatcccaaAGTTACTTTACTGATTACAATtgtggacaggtaactagtaactgtaatggattacatttagaaagtaacctacccaaccctggtctGCAAAATGTATAGTTTTGAGATAATTCGTATTTTAAGTCCCAGATCTCAGAACTGTTTTGTGATGTCTTCCTCTTTAATGACTCAATAAGAAATCACCTTATATACAATTATTTTTGATTGACAATCCAGAAATCCCACTGGCAAAAAcaggttgaatcaatgttgtttccatgtcatttgaaCTAAAACATTTAATGTGATGAAGTTGAATCAATTGTGGGAAAATTCTTGAATTTGGgaatattgtatttttttatgacatggtgacatttgttTTTGATTTcttgttagttgacaactcaagtAATGTAAATAAAAACtggacgttgaact

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0070493 thrombin-activated receptor signaling pathway biological_process
GO:0007596 blood coagulation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015057 thrombin-activated receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110523457 True 2757 mRNA 0.44 2 23426591 23436059

Neighbor

gene id symbol gene type direction distance location
s100z s100z coding downstream 12101 23409397 ~ 23414490 (-)
aggf1 aggf1 coding downstream 66098 23352028 ~ 23360493 (-)
pde8b LOC106568179 coding downstream 75185 23255224 ~ 23351406 (-)
scamp1 scamp1 coding downstream 381218 23026283 ~ 23045373 (-)
bhmt LOC106568115 coding downstream 559480 22862281 ~ 22867111 (-)
LOC110523458 LOC106568234 coding upstream 14508 23450567 ~ 23455364 (-)
LOC110523459 f2r coding upstream 20280 23456339 ~ 23512866 (-)
LOC110522831 LOC106563032 coding upstream 54992 23488916 ~ 23556681 (-)
LOC110523460 NA coding upstream 154730 23590789 ~ 23598535 (-)
LOC110523461 hmdh coding upstream 242223 23678282 ~ 23700703 (-)
G380099 NA non-coding downstream 85408 23340903 ~ 23341183 (-)
G380097 NA non-coding downstream 89858 23336531 ~ 23336733 (-)
G380085 NA non-coding downstream 116078 23308971 ~ 23310513 (-)
G380037 NA non-coding downstream 260250 23166055 ~ 23166341 (-)
G380000 NA non-coding downstream 268776 23154306 ~ 23157815 (-)
G380187 NA non-coding upstream 81529 23517588 ~ 23519374 (-)
G380200 NA non-coding upstream 84407 23520466 ~ 23520993 (-)
G380214 NA non-coding upstream 106054 23542113 ~ 23542400 (-)
jmy LOC106568093 other downstream 624340 22799696 ~ 22859199 (-)
LOC110523434 LOC106567989 other downstream 1247278 22177265 ~ 22179322 (-)
G378359 NA other downstream 1634598 21791662 ~ 21791993 (-)
G377991 NA other downstream 2396808 21029458 ~ 21029783 (-)
G377809 LOC106568602 other downstream 2721451 20704613 ~ 20705140 (-)
G380610 LOC106567829 other upstream 273739 23709798 ~ 23711891 (-)
G380648 NA other upstream 322980 23759039 ~ 23761807 (-)
LOC110523492 LOC106567536 other upstream 2002962 25437411 ~ 25441794 (-)
G383422 NA other upstream 2560747 25996806 ~ 25998780 (-)

Expression


Co-expression Network