G380000


Basic Information

Item Value
gene id G380000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23154306 ~ 23157815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU431963
GGCCAATGTTTACTTCTTTAATTGGAGCTATTACAAAATCAGCCTGACAGTACTTTTGACAGTATTCAATCTGAAGGAAGTATGGTTGGAAGTaactgaaatgcatcagaaaggtaTTGGGATGTTCAGAAGATCATCAGGCAATCATTTTGTCTGTGTTGAGTAAAATCATTGATGATGTTCTTTTCCCCCTCTGATTTAGTGGCTGGTCCTGTCCACTCTGTTCTAATGAGTCTTGAACAGCTTGTGGTCATCGTAGAGGGAAACAGAAGACACATGTGTTCCTGAGAGTCTTATCTTCTCAGTGATGGGGTCATAATATGTTGTAGCTTAATAAACCATTCAAAAGATAGAGCCATATttgtaggaagaaaacagaaaccactctgtttattagaACGGCATCTAGTGTCTACTATGAAATAAGTGTTTCATTTCAGAGTTTCACTCGCGGACCGTTGTACAACATGTTGATCGTCATGTCCTTTAAAGTAACAGCAGACTAAGAGGTTTGTACAACATACCTTTCACAATAAAGTAGCACTTGCACAGAAGGTATGGTTGTTTAGCTATTGGGGAGAGGCATCCAGAGAATCAGGTCACTCAGCCACTCAGAATATTTAAATGAACATGCTGTTGGTACCACCTTTGTTTGTTGTTATCAAATGATAATTGTCCGCTCTCACGTATTTCCTGATTTGAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTGAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGACCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGTGTAAAGTCTGATTTACAGGTCTACGGAGAAACAAGAGTCCTGTTGAAATGAACATTGATGCTCATTGCTGACAATAGACTGTCacagtgtaaaaaaaatatgatgagatgtgtgtatgagtgtgtaccGTATGAGAGGATGTTTAAGCATGAGAGAAACCATATCAATCTCTTTGCCTGCATGTAAGTGTGTATTTGCGtgacagagaatgaaagagaggaagaagaattGAGATTGGGAGACAGAAATAAatgttgtgtatgtgtgagtgtatgtgtgtttttgcatgCATGAGATCTCTCCAAGGTAGCTGTGCATTTCTCCCTGTGTTGGAGGACTAGCGCTAGGGGGCGCTGTAGACTCTAGGCCTGGGCCAGGGCCAGTTTAAGGTCTCGGAGCAGCATGGAGCCCATGACACTCTTTTCTGTGTTGATGGTGATCAGGGCTGTAGACGACTCCCTCAGCTCCACCGTCACCAGCACCACAG
>TU431964
ACAGAGTCTCCGGTCTGGGGAGACACAGAGTCTCCGGTCTGGGGAGACACAGAGTCTCCGGTCTGGGGAGACACAGAGTCTCCGGTCTGGGGAGACACAGAGTCTCCGGTCTGGGGAGACACAGAGTCTCCGGTCTGGGGAGACACAGAGTCTCCGGTCTGGGGAGACACAGAGTCTCAGGTCTAGGGAGACACAGAGTCTCAGGTCTAGGGAGACACAGAGTCTCAGGTCTAGGGAGACACAGAGTCTCAGGTCTACGGAGAAACAAGAGTCCTGTTGAAATGAACATTGATGCTCATTGCTGACAATAGACTGTCacagtgtaaaaaaaatatgatgagatgtgtgtatgagtgtgtaccGTATGAGAGGATGTTTAAGCATGAGAGAAACCATATCAATCTCTTTGCCTGCATGTAAGTGTGTATTTGCGtgacagagaatgaaagagaggaagaagaattGAGATTGGGAGACAGAAATAAatgttgtgtatgtgtgagtgtatgtgtgtttttgcatgCATGAGATCTCTCCAAGGTAGCTGTGCATTTCTCCCTGTGTTGGAGGACTAGCGCTAGGGGGCGCTGTAGACTCTAGGCCTGGGCCAGGGCCAGTTTAAGGTCTCGGAGCAGCATGGAGCCCATGACACTCTTTTCTGTGTTGATGGTGATCAGGGCTGTAGACGACTCCCTCAGCTCCACCGTCACCAGCACCACAG
>TU431965
GGCCAATGTTTACTTCTTTAATTGGAGCTATTACAAAATCAGCCTGACAGTACTTTTGACAGTATTCAATCTGAAGGAAGTATGGTTGGAAGTaactgaaatgcatcagaaaggtaTTGGGATGTTCAGAAGATCATCAGGCAATCATTTTGTCTGTGTTGAGTAAAATCATTGATGATGTTCTTTTCCCCCTCTGATTTAGTGGCTGGTCCTGTCCACTCTGTTCTAATGAGTCTTGAACAGCTTGTGGTCATCGTAGAGGGAAACAGAAGACACATGTGTTCCTGAGAGTCTTATCTTCTCAGTGATGGGGTCATAATATGTTGTAGCTTAATAAACCATTCAAAAGATAGAGCCATATttgtaggaagaaaacagaaaccactctgtttattagaACGGCATCTAGTGTCTACTATGAAATAAGTGTTTCATTTCAGAGTTTCACTCGCGGACCGTTGTACAACATGTTGATCGTCATGTCCTTTAAAGTAACAGCAGACTAAGAGGTTTGTACAACATACCTTTCACAATAAAGTAGCACTTGCACAGAAGGTATGGTTGTTTAGCTATTGGGGAGAGGCATCCAGAGAATCAGGTCACTCAGCCACTCAGAATATTTAAATGAACATGCTGTTGGTACCACCTTTGTTTGTTGTTATCAAATGATAATTGTCCGCTCTCACGTATTTCCTGATTTGAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTGAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTAAAGTCTGACTTAGCATCAGGCCAGGACGTCTGTGTTGAGTGAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGGCCAGGACGTCTGCGTTGAGTAAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGACCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGACCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGTGTAAAGTCTGATTTAGCATCAGACCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGTGTAAAGTCTGATTTAGCAGCAGACCATTCCTTCTCTAAATGTGACATAAAAACGTCAAGCCGGGAGTGTAAAAGCTccagatttgtgtgtgtgggtcagaCGGAGCTGTAAGTTACAGCTGCAGTAGGCCTTAACGGCTTGTGTCATAATGGCAGATAAAGCCATTTCTATACACTGCCAGTTGCagctctcgctgtgtgtgtctgagagggGAACATGGCAGAAGAAGTGGGTGTGAAAAAATATTTTGAGGTCTGTTGTAGTGATTGTCTATGggctgtcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgaacagCTGGCAGGGGGAATAAGTGCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU431963 False 1348 lncRNA 0.42 5 23154306 23157815
TU431964 False 721 lncRNA 0.51 3 23154306 23155146
TU431965 True 1613 lncRNA 0.43 3 23155793 23157815

Neighbor

gene id symbol gene type direction distance location
scamp1 scamp1 coding downstream 108933 23026283 ~ 23045373 (-)
bhmt LOC106568115 coding downstream 287195 22862281 ~ 22867111 (-)
jmy LOC106568093 coding downstream 295107 22799696 ~ 22859199 (-)
si:ch1073-398f15.1 LOC106568085 coding downstream 392809 22757104 ~ 22761497 (-)
dtwd2 dtwd2 coding downstream 411707 22731063 ~ 22742599 (-)
pde8b LOC106568179 coding upstream 97409 23255224 ~ 23351406 (-)
aggf1 aggf1 coding upstream 194213 23352028 ~ 23360493 (-)
s100z s100z coding upstream 251582 23409397 ~ 23414490 (-)
LOC110523457 LOC106568234 coding upstream 268776 23426591 ~ 23436059 (-)
LOC110523458 LOC106568234 coding upstream 292752 23450567 ~ 23455364 (-)
G380002 ap3b1 non-coding downstream 37271 23114547 ~ 23117035 (-)
G379975 NA non-coding downstream 134852 23019240 ~ 23019454 (-)
G379973 NA non-coding downstream 140867 23013077 ~ 23013439 (-)
G379972 NA non-coding downstream 142301 23011377 ~ 23012005 (-)
G379863 NA non-coding downstream 253154 22900468 ~ 22901152 (-)
G380037 NA non-coding upstream 8240 23166055 ~ 23166341 (-)
G380085 NA non-coding upstream 151156 23308971 ~ 23310513 (-)
G380097 NA non-coding upstream 178716 23336531 ~ 23336733 (-)
G380099 NA non-coding upstream 183088 23340903 ~ 23341183 (-)
LOC110523459 f2r non-coding upstream 298550 23456339 ~ 23512866 (-)
LOC110523434 LOC106567989 other downstream 974993 22177265 ~ 22179322 (-)
G378359 NA other downstream 1362313 21791662 ~ 21791993 (-)
G377991 NA other downstream 2124523 21029458 ~ 21029783 (-)
G377809 LOC106568602 other downstream 2449166 20704613 ~ 20705140 (-)
LOC110522831 LOC106563032 other upstream 389385 23488916 ~ 23556681 (-)
G380610 LOC106567829 other upstream 551983 23709798 ~ 23711891 (-)
G380648 NA other upstream 601224 23759039 ~ 23761807 (-)
LOC110523492 LOC106567536 other upstream 2281206 25437411 ~ 25441794 (-)
G383422 NA other upstream 2838991 25996806 ~ 25998780 (-)

Expression


Co-expression Network