RNA id: TU431963


Basic Information

Item Value
RNA id TU431963
length 1348
lncRNA type antisense_over
GC content 0.42
exon number 5
gene id G380000
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23154306 ~ 23157815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCAATGTTTACTTCTTTAATTGGAGCTATTACAAAATCAGCCTGACAGTACTTTTGACAGTATTCAATCTGAAGGAAGTATGGTTGGAAGTaactgaaatgcatcagaaaggtaTTGGGATGTTCAGAAGATCATCAGGCAATCATTTTGTCTGTGTTGAGTAAAATCATTGATGATGTTCTTTTCCCCCTCTGATTTAGTGGCTGGTCCTGTCCACTCTGTTCTAATGAGTCTTGAACAGCTTGTGGTCATCGTAGAGGGAAACAGAAGACACATGTGTTCCTGAGAGTCTTATCTTCTCAGTGATGGGGTCATAATATGTTGTAGCTTAATAAACCATTCAAAAGATAGAGCCATATttgtaggaagaaaacagaaaccactctgtttattagaACGGCATCTAGTGTCTACTATGAAATAAGTGTTTCATTTCAGAGTTTCACTCGCGGACCGTTGTACAACATGTTGATCGTCATGTCCTTTAAAGTAACAGCAGACTAAGAGGTTTGTACAACATACCTTTCACAATAAAGTAGCACTTGCACAGAAGGTATGGTTGTTTAGCTATTGGGGAGAGGCATCCAGAGAATCAGGTCACTCAGCCACTCAGAATATTTAAATGAACATGCTGTTGGTACCACCTTTGTTTGTTGTTATCAAATGATAATTGTCCGCTCTCACGTATTTCCTGATTTGAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTGAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGACCAGGACGTCTGTGTTGAGTAAAGTCTGATTTAGCATCAGGCCAGGACGTCTGTGTTGTGTAAAGTCTGATTTACAGGTCTACGGAGAAACAAGAGTCCTGTTGAAATGAACATTGATGCTCATTGCTGACAATAGACTGTCacagtgtaaaaaaaatatgatgagatgtgtgtatgagtgtgtaccGTATGAGAGGATGTTTAAGCATGAGAGAAACCATATCAATCTCTTTGCCTGCATGTAAGTGTGTATTTGCGtgacagagaatgaaagagaggaagaagaattGAGATTGGGAGACAGAAATAAatgttgtgtatgtgtgagtgtatgtgtgtttttgcatgCATGAGATCTCTCCAAGGTAGCTGTGCATTTCTCCCTGTGTTGGAGGACTAGCGCTAGGGGGCGCTGTAGACTCTAGGCCTGGGCCAGGGCCAGTTTAAGGTCTCGGAGCAGCATGGAGCCCATGACACTCTTTTCTGTGTTGATGGTGATCAGGGCTGTAGACGACTCCCTCAGCTCCACCGTCACCAGCACCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU431967 lncRNA downstream 37271 23114547 ~ 23117035 (-) True G380002
TU431938 lncRNA downstream 134852 23019240 ~ 23019454 (-) True G379975
TU431936 lncRNA downstream 140867 23013077 ~ 23013439 (-) True G379973
TU431935 lncRNA downstream 142301 23011377 ~ 23012005 (-) True G379972
TU431819 lncRNA downstream 253154 22900468 ~ 22901152 (-) True G379863
TU432004 lncRNA upstream 8240 23166055 ~ 23166341 (-) True G380037
TU432055 lncRNA upstream 151156 23308971 ~ 23310513 (-) True G380085
TU432068 lncRNA upstream 178716 23336531 ~ 23336733 (-) True G380097
TU432070 lncRNA upstream 183088 23340903 ~ 23341183 (-) True G380099
TU432092 lncRNA upstream 298550 23456365 ~ 23512866 (-) True LOC110523459
XM_021602141.2 mRNA downstream 108933 23026283 ~ 23045373 (-) True scamp1
XM_021602136.2 mRNA downstream 287195 22862281 ~ 22867111 (-) True bhmt
XM_036976544.1 mRNA downstream 295107 22799696 ~ 22859199 (-) False jmy
XM_021602132.2 mRNA downstream 392809 22757104 ~ 22761497 (-) True si:ch1073-398f15.1
XM_036977063.1 mRNA downstream 411707 22731063 ~ 22742599 (-) True dtwd2
XM_036977077.1 mRNA upstream 97409 23255224 ~ 23338645 (-) False pde8b
XM_036977078.1 mRNA upstream 97409 23255224 ~ 23351406 (-) True pde8b
XM_021602148.2 mRNA upstream 194213 23352028 ~ 23360424 (-) False aggf1
XM_021602150.2 mRNA upstream 194213 23352028 ~ 23360424 (-) False aggf1
XM_021602149.2 mRNA upstream 194213 23352028 ~ 23360493 (-) True aggf1
TU431801 other downstream 352055 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 974993 22177265 ~ 22179313 (-) True LOC110523434
TU430076 other downstream 1362313 21791662 ~ 21791993 (-) True G378359
TU429645 other downstream 2124523 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 2449166 20704613 ~ 20705140 (-) True G377809
TU432173 other upstream 389385 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 551983 23709798 ~ 23711891 (-) True G380610
TU432686 other upstream 601224 23759039 ~ 23761807 (-) True G380648
TU434637 other upstream 2281206 25439021 ~ 25441794 (-) True LOC110523492
TU435637 other upstream 2838991 25996806 ~ 25998780 (-) True G383422

Expression Profile