RNA id: TU432004


Basic Information

Item Value
RNA id TU432004
length 287
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G380037
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23166055 ~ 23166341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacctgtataatgatcatgctgtttaatcagcttcttgatatgactgtcaggtggatggattaacttggcaaaggagaaatgtttactgacagggatgtaaacaaatttgtgcacaaaataatATTACAGGTGTCGGCTATTCTTTGTTTGACATCCGACCTCAAGTAAAACAAGAACAACCATTCAGTCCCctcctatctacagtatctatcgtTTCTTATACTCCTCTCTTTTCTGTCTATCCTGGAACTACCTCTTCATTGAGGCTCTTAATTCGCCTCTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU431963 lncRNA downstream 8240 23154306 ~ 23157815 (-) False G380000
TU431965 lncRNA downstream 8240 23155793 ~ 23157815 (-) True G380000
TU431964 lncRNA downstream 10909 23154306 ~ 23155146 (-) False G380000
TU431967 lncRNA downstream 49020 23114547 ~ 23117035 (-) True G380002
TU431938 lncRNA downstream 146601 23019240 ~ 23019454 (-) True G379975
TU432055 lncRNA upstream 142630 23308971 ~ 23310513 (-) True G380085
TU432068 lncRNA upstream 170190 23336531 ~ 23336733 (-) True G380097
TU432070 lncRNA upstream 174562 23340903 ~ 23341183 (-) True G380099
TU432092 lncRNA upstream 290024 23456365 ~ 23512866 (-) True LOC110523459
TU432172 lncRNA upstream 322575 23488916 ~ 23491267 (-) False LOC110522831
XM_021602141.2 mRNA downstream 120682 23026283 ~ 23045373 (-) True scamp1
XM_021602136.2 mRNA downstream 298944 22862281 ~ 22867111 (-) True bhmt
XM_036976544.1 mRNA downstream 306856 22799696 ~ 22859199 (-) False jmy
XM_021602132.2 mRNA downstream 404558 22757104 ~ 22761497 (-) True si:ch1073-398f15.1
XM_036977063.1 mRNA downstream 423456 22731063 ~ 22742599 (-) True dtwd2
XM_036977077.1 mRNA upstream 88883 23255224 ~ 23338645 (-) False pde8b
XM_036977078.1 mRNA upstream 88883 23255224 ~ 23351406 (-) True pde8b
XM_021602148.2 mRNA upstream 185687 23352028 ~ 23360424 (-) False aggf1
XM_021602150.2 mRNA upstream 185687 23352028 ~ 23360424 (-) False aggf1
XM_021602149.2 mRNA upstream 185687 23352028 ~ 23360493 (-) True aggf1
TU431801 other downstream 363804 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 986742 22177265 ~ 22179313 (-) True LOC110523434
TU430076 other downstream 1374062 21791662 ~ 21791993 (-) True G378359
TU429645 other downstream 2136272 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 2460915 20704613 ~ 20705140 (-) True G377809
TU432173 other upstream 380859 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 543457 23709798 ~ 23711891 (-) True G380610
TU432686 other upstream 592698 23759039 ~ 23761807 (-) True G380648
TU434637 other upstream 2272680 25439021 ~ 25441794 (-) True LOC110523492
TU435637 other upstream 2830465 25996806 ~ 25998780 (-) True G383422

Expression Profile