RNA id: XM_021602150.2


Basic Information

Item Value
RNA id XM_021602150.2
length 2352
RNA type mRNA
GC content 0.50
exon number 15
gene id aggf1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23352028 ~ 23360493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACGTTGGTTGAAAAAATGGCGGCCACGTTGGATTGTAAACACATCAACTGTACCAATTGTAACTTTCTTTATTATCAACAAAACATGTAGTCGGGTGTGTCAGCAATGCATGGTGGTTACAAGATGTTTATGTTCAACTTTCAGGTTGATATTCTTGGCGGAGAGAAACGAGGGCGTTCGTCCAAGCGAAGAAAACAAACGAATCGCCAGAAGTATGGCGACAAATGGAGAGAAGgcgagtggaggagaggaggggtcggATTCCGAGGTGGCTGAGCTTCGCCAGAAAGTAGAGTCGCTAAAGCAAGAACTGAAAAGCTGCACAAAAGAACTGACCAAATTACAGAAACAACTGACCAAGTCTGAGAGTCTTCAGAAAAGCACAGAAGGCTACAATGAAGACTTGAGGAAACAGGTCAACAAGCTTAGTGCAGAGATTCATGAACGAAAGAAAAAGGCGAAAGAGAGAGCTGAagctgagacacagacagaggaataTACCTGGTCAGAAACTGAttattacaactactactatgGAGGAGGCTACTACCAGGGTGATGGTGTGACTACAGACACCCAGGTGACAGTGACACCTGAGGGGCAGGAAGCCACTGATGCCGCAGAGATGACAGCTGCAGAATCAACCACTGACACAGCTACAGACATGACGACAGACAACGCCACAGCGATGATTACAGAGGTGTCTGTAGAGGGTGGTATTGCTGCCGCTCAACCAGAGGAAGTGGATACGGGCTCCATAGCAGACATGCTGAGAGCCACAGCTGAGCAGGCCATGACACAGACTGGCTTTGTGTTTGATGAGACCACAGGGATGTACTACGACCACAGCACTGGCTTTTACTACGACTCGGCCAGTCAGTTGTACTATGATAACAACACAGGCATGTACTACTACTACGATGCAGAGAGTGGCAAGTACCAGTTCCACTCCAGGATAGAGGTTCCTACTGTACAGCCTGTCTCAGAGAccagccaggtgaaaaagagccTAGACAAGAAAGGAAGGAAGTGGAAGAAAGTTCCAGAGAGAACCGCCCGTCAGGATGATAAGGTAGAAGACGTGACTAACTCACTGGCTAACATGAAGATTTCCTATTTCTGGAACTCAGCTTCCCGTAGAGTTGCTGAGAAGGTATGGCCACCCTGTGTGAGGGTGACAGTGGTCAGATCTCCAGTGTTACAGACAGGAACACTCTTCATCATCACAGCTGACTCTCCAGCCACCATTGGCAGGGAGAAGGATATGAACCATGCCATTAGTATATCTGAAATGGGAGTCAGTAAGCTCCATGCAGAGGTGTACTTTGACCAGGACCAACAGTGCTACATGCTAGTGGACCAGGGAAGTCAGAACGGAACTGTCCTCAATGGCAACCGAATCCTACAGCCCAACGCTAAGTGTGACCCTTGCCCTCTGACCCATGGGGATGAGGTGAAGATGGGAGAGACTGTTCTGTCCTTCCACATCCACGCAGGGACAGACACCTGTGACGGCTGTGAACCTGGACAGGTCATGGCTCACCTCAGCAAACACCAGAGGAACCAACCACTACAGACCGGTCCAGCTCCAACCAAAGAGGACAAGGAGCTGCTCCGACAGAAAGAACTGAAACAGATGAAGGTTAAATATGGCCTGAAGAGCGCTGAGTATGAGGAGGATAAAGCCCTGAGGAACCCCAGGTATGTGGACCGGGCCGAGTCTCGCCGTCAGACGGTGGGCAGCGAGGGAGTCTTTCAACGGGATGACGCACCCGCCTCTGTACACGTTGAGATCAGTGAAGTCAACAAGGGAAGGAAGATGTTGGAGAAGATGGGCTGGAAGAAAGGAGAAGGCCTGGGCAAAGATGGAGCTGGAATGAAAGACCCGATCCAGTTGAAGGTCCGGAAGTCCCAGTCAGGCTTTGGGGCAGGAGCTGTTGTGTCGGTGGACGAGGCTGGGACTCTGAGTAGGACCAAGACCCAGAGGAACTGGGAGAAGGCCAGGGAGCGGTTTAATGACACATGCCAGACAGAGACACCCACAGTAAAGAAGGAGCAGAGCCCAGCACCCAAACCCTGGGTTAAAGGAGAAGTGGCTGAGTGACATCCAATGTTTCTAGTCTATATCTCAGAAAGGCCAGTCACCCTATCCACCATGGAGAAGTGGGTAATTgactgcagacagacacacagggtggTCTAATTGCATTATCTTTACTGACTGAATCCACTTCTTGGAATGAGGGTGGAGTGAGTATGGTGCTGGTACTCAGATTTTATTCCAACCGCAATAAAGTGGCATAGCGCCATCTGTCCAGTCATTCAGAACTGTGCAGTGTGAACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432070 lncRNA downstream 10845 23340903 ~ 23341183 (-) True G380099
TU432068 lncRNA downstream 15295 23336531 ~ 23336733 (-) True G380097
TU432055 lncRNA downstream 41515 23308971 ~ 23310513 (-) True G380085
TU432004 lncRNA downstream 185687 23166055 ~ 23166341 (-) True G380037
TU431965 lncRNA downstream 194213 23155793 ~ 23157815 (-) True G380000
TU432092 lncRNA upstream 95941 23456365 ~ 23512866 (-) True LOC110523459
TU432172 lncRNA upstream 128492 23488916 ~ 23491267 (-) False LOC110522831
TU432176 lncRNA upstream 157164 23517588 ~ 23519374 (-) True G380187
TU432189 lncRNA upstream 160042 23520466 ~ 23520993 (-) True G380200
TU432205 lncRNA upstream 181689 23542113 ~ 23542400 (-) True G380214
XM_036977078.1 mRNA downstream 622 23255224 ~ 23351406 (-) True pde8b
XM_036977077.1 mRNA downstream 13383 23255224 ~ 23338645 (-) False pde8b
XM_021602141.2 mRNA downstream 306655 23026283 ~ 23045373 (-) True scamp1
XM_021602136.2 mRNA downstream 484917 22862281 ~ 22867111 (-) True bhmt
XM_036976544.1 mRNA downstream 492829 22799696 ~ 22859199 (-) False jmy
XM_021601314.2 mRNA upstream 48973 23409397 ~ 23414490 (-) True s100z
LOC110523457 mRNA upstream 66167 23426591 ~ 23436059 (-) True LOC110523457
XM_021602155.2 mRNA upstream 90143 23450567 ~ 23455364 (-) True LOC110523458
XM_021602156.2 mRNA upstream 95915 23456339 ~ 23460601 (-) False LOC110523459
XM_036977082.1 mRNA upstream 130627 23491051 ~ 23547503 (-) False LOC110522831
TU431801 other downstream 549777 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 1172715 22177265 ~ 22179313 (-) True LOC110523434
TU430076 other downstream 1560035 21791662 ~ 21791993 (-) True G378359
TU429645 other downstream 2322245 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 2646888 20704613 ~ 20705140 (-) True G377809
TU432173 other upstream 186776 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 349374 23709798 ~ 23711891 (-) True G380610
TU432686 other upstream 398615 23759039 ~ 23761807 (-) True G380648
TU434637 other upstream 2078597 25439021 ~ 25441794 (-) True LOC110523492
TU435637 other upstream 2636382 25996806 ~ 25998780 (-) True G383422

Expression Profile