RNA id: XM_021602141.2


Basic Information

Item Value
RNA id XM_021602141.2
length 3805
RNA type mRNA
GC content 0.44
exon number 9
gene id scamp1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23026283 ~ 23045373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTGCTTATTCTTGCTGGTGGAACGGAGGTCAAAGCAATCCGCGACAAGACTAGCTGCAGACGTTGTTTTGAAGTACAGCTGTTTATTTTTTACTACCACTTCGGTTTTTAATAATTGAAGACATCATCGAAGTACGATGTCAGATTTCGACCACAACCCGTTCGCGGACCCTGAATTCAATAATCCTTTTCAGGATCCGTCAGTGACACAAGTAACACAAAATGCTCCTCCAGGGTTGGAAGAGTACAACCCCTTCACAGATGCCAAGCCGGTCCCTCCTGGCACTGCACCCAAAGTACCTGCCCCCACCACCAACACACAGCCAGCCATCATGAAGCCTACAGAAGAACCGCCTGCATACTCGCAGCCTCAACAGACacaggAGCAAGTGAGGGCTTCAGCAGAGCTgctgaggagacaggaggagctGGAGAGGAAGGCAGCAGAGCTAGACCgccgggagagagagatgcagtcccTCAACGCATCAGGAGGTAGGAAAAACAACTGGCCTCCTCTCCCAGAGAAGTTCCCTGTGGGTCCCTGTTTCTACCATGACATCACAGTGGACATCCCTGTAGATTTCCAGAAGACTGTCAAGATCATGTACTACATTTGGATGTTCCACACGGGGACACTGTTTGCCAACATGTTTGGCTGTTTGGCCTGGTTCTGTGTGGATGCGTCCAGAGGAGTGGACTTCGGCCTGTCCATGCTCTGGTTCATGATCTTCACTCCCTGCTCCTTCGTCTGCTGGTATAGACCCCTCTACGGAGCCTTCAGgaGTGACAGCTCTTTCCGTTTCTTCGTCTTCTTTTTCGTCTACATCTGTCAGTTTGGTGTTCATGTGATGCAGTCCATCGGCATCTCCGGCTGGGGTGCCAGTGGGTGGATCTCAGCTCTGACTGGTCTGAATAAGAGCATCCCTGTTGGCATCATCATGATCCTCATCGCTGCTCTATTCACTGCCCTTGCTACCATGTCCCTCATCATGTTCAAAAagGTACATGGTATGTATCGCACCACAGGGGCCAGCTTTGAGAAGGCCCAGGCAGAGTTCGCCACGGGCGTCATGGCCAACAAGACGGTCCAGACAGCCGCCGCTACTGCAGCCTCCAACGCTGCCAGCGGAGCATTCAAGCAACAGATCTGATTGGTCCACAGACACCCCTAGAGCTCGCCCTCTTTCTTCTATCTGTCCAATCCAAGCTCCAGAGCGAGCTGGAGTTTCCCTGCCCTCCTAACCTATCTCTACTGACATGACTAGCATGACACCTAGAAGGATGAGACCTATGATGTCATAGTAGATGAAAGCAGGAAGTAGAAATGAGGCTCGTTTGAATCGTTTCATTCAGTTCAATTTGTCTCCCAGTGCAGATGTACTTCCTATAGAGTCTTTGAGCTTTATGACATCCCCGTCTGatccctctccttctcattcTGCTCACATGGCGACACCCAACTTCCACCAAGCCCCGCCTCTCACATGCCCTGAGGGCTGTAACTCCGCCCACCCCAGTGACTTTATTAATGCACTCCTGTCCTGTGTCTGTCTTACCCCATACCCTTTAGTCATGTCACTAAGTGTTTGCAAACTTTCCTTTTGAGTGTATGATTGTgcagctgtgtgtatgtatgggtgtacagctgtctgtatgtgtgtgtatatgaataTTAGTGTCTCTCCATATGTTGATGCTGAGGCCTATATACTATATTTCTCTCATTCTCTAAAGCATTGTACCAAGTCAATTCACTGCACCAACACTATCTTAGCTGTAGCTATCCATTCACTTCCACGACTGTTTTATTAACTGGATTTAGCCAAGTACTGTTAAAATGTAACACTTAATAAAATCAACAGTTGTTTACTTCTTTTGAACCCTGAGCCGGTCAGGCTGAGATGGTCACTAGTCAGTGAGGTGTGTCCTCTGGTGGTGATACTGGCTAGTGTTGATGATGAATGCTGTGCATTCCACAACATTGTTTAATACCTCGGAATGATCACATCTAAATGGTTTAATCTCAAGAAGCGAGTGTAAACTGATCAGAACTCTAAATCAGGAAGGAAGGGTACTATTATGTCTGTACAGTTCATACACTATGGCAGTCACGCGACATGTTATTGTTCAGTTGACGTTATGGTTAAAAGAGAGCAGTTAGCTCTGACACCTGTGGTTGCATCTGTCCAACTTAACAGGTACGAGTCTCAGAAATCAGGATTCTGTCTTCTACGGTCTTATCCTTTTCATAACCGTGCTTTTCTTACAGCCTTGTAGTCTTGCCTTTGATAACGTTTGATCAAAATACCTTATAATATAAACAAAGAACCAGATGACATGAACCTAAATGTCATAGCCTCTATCCTCTAGCCTTGTCCCTTGCTTTAGTGGTAAAGTTGCACTTCATGTAGACActccttcacacacacatccacccaacAGCTGGATTCTAGGCCTTGAGACCTGCACAGACACGTGTATGCTAGCTAAACTATATGCTAACAAATGACTccagtgtgtgagagagctaGCTCGTCTCCAGCCTTGGTTTTCTGGTGGAGACATACCTCAGTTGCAGTTGGTACTATTCAGGATTATATCAAGATGTACTCTACGTGCATGACAAAGCTTGCAGATCAGCTGGACACTACTCTGGTCTAGGCATCTGTGTGTATAGAAGTCCATGGTTACACTCCAGTGAGTGGATGAACTGATGAAAAGGAGGATTCTGTCTGTTTGAAGTTGATGCTGTGCATTAAAGTGAATCACTCCAGTAGTCCCTCTTTCTCCAAACACCCCTTCAGAACAGGAGATATCATTGTTTATATCCCAGTTATATCATTGGTCTGTGCTGTGTAGATGCTGATCACCTGAGTATTCATTATTGTATCTTCATGGTTGAGTGAAAGGAGAGATTCTTCTATTCCCAGAGGCTTGTTTATTGGTTTGTCTGTTCTGTGTCTTCCCCTCAGTTCGATTGTATTCATCATGCTAGATAGAAAGTACTGAATAAGTTCTGATTCCATTCAATTTATTAACTTGTCTTGTTTTGAGTGTTTATAACTGAACCTACCTGTGACTTTCAGCCTTTGAATGTGACATGAAGAGAGGTTGCGGATGTTTGAGGGGTGTGTGCGTGCCCATGTGTGCTGTAATATCATTGACGTGTGTGTTGTGGGGTGCCAGTCAAAGTGAAGTCTTAACAAGGATAACTGGTTGTTCAGTTGAACACTGTGGGCAGAGACAGGCTGGCATCCTCCTTTTTATACTTTCCTTAATAGTCTAATAGTCATTCATCTCTCTGTGGTCTTGAGtatgagtgaatgtgtgtgtgctgagcTACTTTGTTATTCTACATCTTTTGAAAATCTGAACGAATGGCACCTGAATGTTCCTGTTAAATATGTGTTGGCttgaaaacaataaaaaaaaatgcatcaacTGGGAAATGTGAGAAAGTCAGTAGGTGAAACTAAGCGATGTTTGTGTTTTGAGATGGACTGTGGCTTTAACTTGTGCTTTTTAATCAATGTACCAAGTATATAGTAAAGTACTGAGAATGAATATGACATTTGTCTTGCTCAACTCTGACAATGAAATAAATTGaagttatttaaaaaattaaGCAAACTTTAAGGGATGTTTGTAGATTTTGTAAAGTTTGACAACTTGTCGACTAGTATCCTGAATTTCATTGTACTGTACAgaaactctcctctcctttttagTCGCATGTTGAGTAGTTTAAGTTTTGTATATTTATTGtattaacacaaaataaaattCAGAAGTCAACTCTA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU431938 lncRNA downstream 6829 23019240 ~ 23019454 (-) True G379975
TU431936 lncRNA downstream 12844 23013077 ~ 23013439 (-) True G379973
TU431935 lncRNA downstream 14278 23011377 ~ 23012005 (-) True G379972
TU431819 lncRNA downstream 125131 22900468 ~ 22901152 (-) True G379863
TU431779 lncRNA downstream 259408 22766610 ~ 22766875 (-) True G379828
TU431967 lncRNA upstream 69174 23114547 ~ 23117035 (-) True G380002
TU431963 lncRNA upstream 108933 23154306 ~ 23157815 (-) False G380000
TU431964 lncRNA upstream 108933 23154306 ~ 23155146 (-) False G380000
TU431965 lncRNA upstream 110420 23155793 ~ 23157815 (-) True G380000
TU432004 lncRNA upstream 120682 23166055 ~ 23166341 (-) True G380037
XM_021602136.2 mRNA downstream 159172 22862281 ~ 22867111 (-) True bhmt
XM_036976544.1 mRNA downstream 167084 22799696 ~ 22859199 (-) False jmy
XM_021602132.2 mRNA downstream 264786 22757104 ~ 22761497 (-) True si:ch1073-398f15.1
XM_036977063.1 mRNA downstream 283684 22731063 ~ 22742599 (-) True dtwd2
trnag-ccc mRNA downstream 295985 22730228 ~ 22730298 (-) True trnag-ccc
XM_036977077.1 mRNA upstream 209851 23255224 ~ 23338645 (-) False pde8b
XM_036977078.1 mRNA upstream 209851 23255224 ~ 23351406 (-) True pde8b
XM_021602148.2 mRNA upstream 306655 23352028 ~ 23360424 (-) False aggf1
XM_021602150.2 mRNA upstream 306655 23352028 ~ 23360424 (-) False aggf1
XM_021602149.2 mRNA upstream 306655 23352028 ~ 23360493 (-) True aggf1
TU431801 other downstream 224032 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 846970 22177265 ~ 22179313 (-) True LOC110523434
TU430076 other downstream 1234290 21791662 ~ 21791993 (-) True G378359
TU429645 other downstream 1996500 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 2321143 20704613 ~ 20705140 (-) True G377809
TU432173 other upstream 501827 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 664425 23709798 ~ 23711891 (-) True G380610
TU432686 other upstream 713666 23759039 ~ 23761807 (-) True G380648
TU434637 other upstream 2393648 25439021 ~ 25441794 (-) True LOC110523492
TU435637 other upstream 2951433 25996806 ~ 25998780 (-) True G383422

Expression Profile