RNA id: TU431819


Basic Information

Item Value
RNA id TU431819
length 600
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G379863
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22900468 ~ 22901152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGATGAAGTAGTCCAGACCAGCTTCCAGGGGGTTGGTGTCACAGTTcatctgatgagacaaaaacatCAGTCCAACAGCCACAAACAACTTAAAAAGGTGTGTGTACGTACCTCTGCACCCCAGCCTCTGAAGCCTTTCTCCAGTCGTAGTGATGACATGGCGTAGGTACCAAAGTTGTCGATGCCCTCGTCCTCTCCTGCTGCCATGATAGCCTGGTACACAGCTGCCATGTCCTTGTGAGGAATGTACAGCTCCCAGCCCAACTCACCTGTAAGAGATCCTGATAGCTCTGAGGTTGATGCCACCCAGTTGAATGGGTTTGCAGTGGAGGAACTTAAAGCTTGCATCGCTCATGTCCTCCTGAGTGAGTTTCTGTAGAACATCTCTAGCCTTTGGTCCAGCCACACCCAACACCCCAATTTCCTCTGTCACGTTGGAAATATCTACATCATAAGCCCCCTCTGCTACCTCCTTCTCCATCCACCTGGGGTTAGGGAGGGATCCATGGGGTTATATTTACAACTTCAAGGAACTCAAAAGGAAACGAAACACTGGcacaatgttgattcaactaaTAAAAGTCTTCAATATGAACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU431779 lncRNA downstream 133593 22766610 ~ 22766875 (-) True G379828
TU431775 lncRNA downstream 136550 22763666 ~ 22763918 (-) True G379824
TU431773 lncRNA downstream 144818 22754269 ~ 22755650 (-) True G379822
TU431688 lncRNA downstream 238220 22617412 ~ 22662248 (-) True G379745
TU431630 lncRNA downstream 394332 22503862 ~ 22506136 (-) True G379698
TU431935 lncRNA upstream 110225 23011377 ~ 23012005 (-) True G379972
TU431936 lncRNA upstream 111925 23013077 ~ 23013439 (-) True G379973
TU431938 lncRNA upstream 118088 23019240 ~ 23019454 (-) True G379975
TU431967 lncRNA upstream 213395 23114547 ~ 23117035 (-) True G380002
TU431963 lncRNA upstream 253154 23154306 ~ 23157815 (-) False G380000
XM_021602136.2 mRNA downstream 33357 22862281 ~ 22867111 (-) True bhmt
XM_036976544.1 mRNA downstream 41269 22799696 ~ 22859199 (-) False jmy
XM_021602132.2 mRNA downstream 138971 22757104 ~ 22761497 (-) True si:ch1073-398f15.1
XM_036977063.1 mRNA downstream 157869 22731063 ~ 22742599 (-) True dtwd2
trnag-ccc mRNA downstream 170170 22730228 ~ 22730298 (-) True trnag-ccc
XM_021602141.2 mRNA upstream 125131 23026283 ~ 23045373 (-) True scamp1
XM_036977077.1 mRNA upstream 354072 23255224 ~ 23338645 (-) False pde8b
XM_036977078.1 mRNA upstream 354072 23255224 ~ 23351406 (-) True pde8b
XM_021602148.2 mRNA upstream 450876 23352028 ~ 23360424 (-) False aggf1
XM_021602150.2 mRNA upstream 450876 23352028 ~ 23360424 (-) False aggf1
TU431801 other downstream 98217 22799700 ~ 22802251 (-) True jmy
TU431328 other downstream 721155 22177265 ~ 22179313 (-) True LOC110523434
TU430076 other downstream 1108475 21791662 ~ 21791993 (-) True G378359
TU429645 other downstream 1870685 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 2195328 20704613 ~ 20705140 (-) True G377809
TU432173 other upstream 646048 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 808646 23709798 ~ 23711891 (-) True G380610
TU432686 other upstream 857887 23759039 ~ 23761807 (-) True G380648
TU434637 other upstream 2537869 25439021 ~ 25441794 (-) True LOC110523492
TU435637 other upstream 3095654 25996806 ~ 25998780 (-) True G383422

Expression Profile