RNA id: TU431773


Basic Information

Item Value
RNA id TU431773
length 1382
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G379822
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22754269 ~ 22755650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcaaagttcaagggggccgaatactttcgcaaggcattgtcCTTGCTTATTTTACCATTTTTAAACCGTAGCACAGTAGCACTTTTTGGTCTGGTTTCCCGGGCCCAGCCTAAACACTTTCAACTGAGATTCTCTATTAAGCAGTCAGTCAGACTCATAGGTAATTGTTAGGTTATTACCATTTAACCATTTCATTTCTAAATAAATATCTGATCATTTCTGAACTGTAAAATAAAATGTTCCTCTCCTTTTGTATCTAAGAGAGAGGAGTGTACCGTATAGCCGCTGCTCCAGATCATCCAATCTCCTCTGTGTTGATGGATGGTGACCAGTTGAaaaaaacctgtgtgtgtgtgttagaaataGGAGGTATGAATCACGGAAGGGGAGGGGGGAATTGGAGAGGTGGGGTTTGTCAAATGAGTAGCCTCTTATACACATTGATGACCTTATaggaagggagtgtgtgtgtgttgtcttaaGTGCACCCCTTGCCTCCACTCACTGTAAAGGGTTATAAATAACCATCCTTGGCCTGAGCCTGACAACCCCCATCTTGACACCGAGTCTCTGTAACCCTGTTCTCTTCTCAGATTGGTCTAGTAACCATCTTCTTGGATTGGCTCCCACTGCAAAGAACCTTGCAGCATAAACACATAGTgggatatgtactgtatgttcagGTTTCTTATTCCACGTGAAGTATGGATGGTAATTAAATATAAGTTTACACGTTTATCCAAGTGTTCCCTGTGTGTCAGCTTGTTGTTGTGGATGCTCTAACTGAAGACTGAAGCAGCTGCCAACTCAATCTGAGGAACTGAAGTAGATCTGCATACCTGCTCCCTTTCTTGTATTCATGCAGTATTCCTCGTCATTCTCCTATTCATCGTGTGTATCTTCCCCTGTGAAGAGTTGATGTGCTTTTCACTGGTTTTCAAAGGGTTTTGCATTGTATTGTGTTATATGGGGCTATAACAGAGATTTTGATAACACATTCACATCACCATCAGcgtgttttatttcatttttagtTTCAGGTGAGATTGTAACGTTTTGTTAACATTTTGTTGAAAGGCTTTAGTGCCATCTTCTGGCCAAATGGAAAATCGTACGGTCTTTCCCGCACCAGAACGGCAGGAAACGGTAATGCACCAACTGTGCGGTGTGCGCTAGTTACCACAAACACAAAGTCAAAATTATCCAAATtttatgagaaaaaaatatatttttgatcttaatttaggttagggttaggcatacggTTGGCAGTGTGGTTaagattaaggttaggtttaaaaatacATTGTAGAAATAGGAGAGGTTTATGACTGTAGTTACGAATAAATACTAAACTGCAGTTTAACACCAGGAAATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU431688 lncRNA downstream 92021 22617412 ~ 22662248 (-) True G379745
TU431630 lncRNA downstream 248133 22503862 ~ 22506136 (-) True G379698
TU431463 lncRNA downstream 396183 22357064 ~ 22358086 (-) False G379556
TU431464 lncRNA downstream 396183 22357064 ~ 22358086 (-) False G379556
TU431465 lncRNA downstream 396183 22357064 ~ 22358086 (-) True G379556
TU431775 lncRNA upstream 8016 22763666 ~ 22763918 (-) True G379824
TU431779 lncRNA upstream 10960 22766610 ~ 22766875 (-) True G379828
TU431819 lncRNA upstream 144818 22900468 ~ 22901152 (-) True G379863
TU431935 lncRNA upstream 255727 23011377 ~ 23012005 (-) True G379972
TU431936 lncRNA upstream 257427 23013077 ~ 23013439 (-) True G379973
XM_036977063.1 mRNA downstream 11670 22731063 ~ 22742599 (-) True dtwd2
trnag-ccc mRNA downstream 23971 22730228 ~ 22730298 (-) True trnag-ccc
XM_021602130.2 mRNA downstream 24226 22721826 ~ 22730043 (-) True LOC110523441
XM_021602125.2 mRNA downstream 24227 22721826 ~ 22730042 (-) False LOC110523441
XM_021602126.2 mRNA downstream 24227 22721826 ~ 22730042 (-) False LOC110523441
XM_021602132.2 mRNA upstream 1454 22757104 ~ 22761497 (-) True si:ch1073-398f15.1
XM_036976544.1 mRNA upstream 44046 22799696 ~ 22859199 (-) False jmy
XM_021602136.2 mRNA upstream 106631 22862281 ~ 22867111 (-) True bhmt
XM_021602141.2 mRNA upstream 270633 23026283 ~ 23045373 (-) True scamp1
XM_036977077.1 mRNA upstream 499574 23255224 ~ 23338645 (-) False pde8b
TU431328 other downstream 574956 22177265 ~ 22179313 (-) True LOC110523434
TU430076 other downstream 962276 21791662 ~ 21791993 (-) True G378359
TU429645 other downstream 1724486 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 2049129 20704613 ~ 20705140 (-) True G377809
TU429433 other downstream 2059561 20694096 ~ 20694708 (-) True G377800
TU431801 other upstream 44050 22799700 ~ 22802251 (-) True jmy
TU432173 other upstream 791550 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 954148 23709798 ~ 23711891 (-) True G380610
TU432686 other upstream 1003389 23759039 ~ 23761807 (-) True G380648
TU434637 other upstream 2683371 25439021 ~ 25441794 (-) True LOC110523492

Expression Profile