LOC110523464 (LOC106567795)


Basic Information

Item Value
gene id LOC110523464
gene name LOC106567795
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23729177 ~ 23736929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977091.1
TGCCTGTTCACATTTCACAGCGACATCTAGCGGAAAGGTCAAACACGGGCACTGCTGAAAACTACGTTACCCAGAAACCCTTCGTCAATTTATAGCGGATTCTACAGGGataggctagctagctactgctGTCCAAATAAACAACATTAACAAAATGTAAGCAAATATGAAAGATTTGCCTGTTTCTTTCGAACATTGTGGATATAATATGCTGCGCAGAAAGCCCACCCGTCTGGAATTGAAGTTGGATGACACTGAggagtttgagtgtgtcaagaaagAACTTGAGATTCGGAAAAAACAGAGCGATGAAGTGGATGTTGTTGGTGTGGCTATGTTTAGTAACATGGTGGGGGCCAGCGGTGGAACAGGGGATGGAAAGACACGGGAACAGATGATCAACGAGAGAATAAGCTACAAGCCCCATCCTAAACCCAACACCTTGCCCTCACTCTTTGGAAACCTGTAGTTTTAGGTTCCTAATAGGCACATTCACAAGACTACTCAAACTGTTGGCTCCACCAGTGTTGGTGTGTGGATGGCACAGTAACAATGCTATTGACATGGTCAGGGATACCTGTGGGCTTGCCTGAGGTCAGAATTCCCTTCACAAAGAAATGTGTAGTTTGAGGATCATGTTTTGCTTATAACACATATCTTCTAAAGTAATGTTGTTGCATTTACCTGAAATGTTATGACTTGCGATGCAAAGCGTGTGGCCTTTCTTTTGTACAACATGTTTCATGGGAGCTGTTGTAGTGGTTTCCCTCGATTACAAAAATCCAGACTTGGTAGTCCCAGGAAGGTGAAGGTAGCATCTTTGGGGCAAAATGGAATGGACTTGATAACTAATCAGTTATTACTTAGAATGGTATGATTGTAGTTTTATTGGCCTTCAAGGCTGCATTATGAGAATGCAACAGAATCAAACATACAGTTCTTGAATGATACCATTTATTACTTGTTTTCTCTAGATGATTACAGCACAGTAAATACGTCATACTATACAGACATGTCTGTGGACTTAACAGTCCAGGTAATGTTCACACTGTTGCTGCGCTGGAGTGGCAGTCAGACTCCCACTGCTGTTTTGGCCCATTAACTTCAACGCTCGAGTTGTACAGTAGACTATAATAATAAATCTTGATACATGATCCCATGTGGTAAAGCAGAAACAGTTATAATATGTTCAAGTATACACCAACTATTAATGTCCCTGGCTTGATTGTAATGTAATGAGAATGTGCGGCAGTTAAATCCAGTTATAGCAACTAGGAATTTGACCCTCAAACCAGGCACAGCACATCACTAAGGCTGTGTTTAGACAAGCAgctcaattctgatattttttccactaattggtcttttgaccaatcacatcagatctttctACAACCGATATTTTCCAGATctaattggtcaaaagaccaattaactgagtgtaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>XM_021602164.2
TTGCCTGTTCACATTTCACAGCGACATCTAGCGGAAAGGTCAAACACGGGCACTGCTGAAAACTACGTTACCCAGAAACCCTTCGTCAATTTATAGCGGATTCTACAGGGataggctagctagctactgctGTCCAAATAAACAACATTAACAAAATGTAAGCAAATATGAAAGATTTGCCTGTTTCTTTGTGAGTACCACTGGATCCGAGACAAATTGACGTATGGAGCGCTCAATTTTGCCCTCTTTAGCCGTGCTTGCGAACATTGTGGATATAATATGCTGCGCAGAAAGCCCACCCGTCTGGAATTGAAGTTGGATGACACTGAggagtttgagtgtgtcaagaaagAACTTGAGATTCGGAAAAAACAGAGCGATGAAGTGGATGTTGTTGGTGTGGCTATGTTTAGTAACATGGTGGGGGCCAGCGGTGGAACAGGGGATGGAAAGACACGGGAACAGATGATCAACGAGAGAATAAGCTACAAGCCCCATCCTAAACCCAACACCTTGCCCTCACTCTTTGGAAACCTGTAGTTTTAGGTTCCTAATAGGCACATTCACAAGACTACTCAAACTGTTGGCTCCACCAGTGTTGGTGTGTGGATGGCACAGTAACAATGCTATTGACATGGTCAGGGATACCTGTGGGCTTGCCTGAGGTCAGAATTCCCTTCACAAAGAAATGTGTAGTTTGAGGATCATGTTTTGCTTATAACACATATCTTCTAAAGTAATGTTGTTGCATTTACCTGAAATGTTATGACTTGCGATGCAAAGCGTGTGGCCTTTCTTTTGTACAACATGTTTCATGGGAGCTGTTGTAGTGGTTTCCCTCGATTACAAAAATCCAGACTTGGTAGTCCCAGGAAGGTGAAGGTAGCATCTTTGGGGCAAAATGGAATGGACTTGATAACTAATCAGTTATTACTTAGAATGGTATGATTGTAGTTTTATTGGCCTTCAAGGCTGCATTATGAGAATGCAACAGAATCAAACATACAGTTCTTGAATGATACCATTTATTACTTGTTTTCTCTAGATGATTACAGCACAGTAAATACGTCATACTATACAGACATGTCTGTGGACTTAACAGTCCAGGTAATGTTCACACTGTTGCTGCGCTGGAGTGGCAGTCAGACTCCCACTGCTGTTTTGGCCCATTAACTTCAACGCTCGAGTTGTACAGTAGACTATAATAATAAATCTTGATACATGATCCCATGTGGTAAAGCAGAAACAGTTATAATATGTTCAAGTATACACCAACTATTAATGTCCCTGGCTTGATTGTAATGTAATGAGAATGTGCGGCAGTTAAATCCAGTTATAGCAACTAGGAATTTGACCCTCAAACCAGGCACAGCACATCACTAAGGCTGTGTTTAGACAAGCAgctcaattctgatattttttccactaattggtcttttgaccaatcacatcagatctttctACAACCGATATTTTCCAGATctaattggtcaaaagaccaattaactgagtgtaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>XM_036977092.1
TTGCCTGTTCACATTTCACAGCGACATCTAGCGGAAAGGTCAAACACGGGCACTGCTGAAAACTACGTTACCCAGAAACCCTTCGTCAATTTATAGCGGATTCTACAGGGataggctagctagctactgctGTCCAAATAAACAACATTAACAAAATCGAACATTGTGGATATAATATGCTGCGCAGAAAGCCCACCCGTCTGGAATTGAAGTTGGATGACACTGAggagtttgagtgtgtcaagaaagAACTTGAGATTCGGAAAAAACAGAGCGATGAAGTGGATGTTGTTGGTGTGGCTATGTTTAGTAACATGGTGGGGGCCAGCGGTGGAACAGGGGATGGAAAGACACGGGAACAGATGATCAACGAGAGAATAAGCTACAAGCCCCATCCTAAACCCAACACCTTGCCCTCACTCTTTGGAAACCTGTAGTTTTAGGTTCCTAATAGGCACATTCACAAGACTACTCAAACTGTTGGCTCCACCAGTGTTGGTGTGTGGATGGCACAGTAACAATGCTATTGACATGGTCAGGGATACCTGTGGGCTTGCCTGAGGTCAGAATTCCCTTCACAAAGAAATGTGTAGTTTGAGGATCATGTTTTGCTTATAACACATATCTTCTAAAGTAATGTTGTTGCATTTACCTGAAATGTTATGACTTGCGATGCAAAGCGTGTGGCCTTTCTTTTGTACAACATGTTTCATGGGAGCTGTTGTAGTGGTTTCCCTCGATTACAAAAATCCAGACTTGGTAGTCCCAGGAAGGTGAAGGTAGCATCTTTGGGGCAAAATGGAATGGACTTGATAACTAATCAGTTATTACTTAGAATGGTATGATTGTAGTTTTATTGGCCTTCAAGGCTGCATTATGAGAATGCAACAGAATCAAACATACAGTTCTTGAATGATACCATTTATTACTTGTTTTCTCTAGATGATTACAGCACAGTAAATACGTCATACTATACAGACATGTCTGTGGACTTAACAGTCCAGGTAATGTTCACACTGTTGCTGCGCTGGAGTGGCAGTCAGACTCCCACTGCTGTTTTGGCCCATTAACTTCAACGCTCGAGTTGTACAGTAGACTATAATAATAAATCTTGATACATGATCCCATGTGGTAAAGCAGAAACAGTTATAATATGTTCAAGTATACACCAACTATTAATGTCCCTGGCTTGATTGTAATGTAATGAGAATGTGCGGCAGTTAAATCCAGTTATAGCAACTAGGAATTTGACCCTCAAACCAGGCACAGCACATCACTAAGGCTGTGTTTAGACAAGCAgctcaattctgatattttttccactaattggtcttttgaccaatcacatcagatctttctACAACCGATATTTTCCAGATctaattggtcaaaagaccaattaactgagtgtaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>TU432639
ACCATTTATTACTTGTTTTCTCTAGATGATTACAGCACAGTAAATACGTCATACTATACAGACATGTCTGTGGACTTAACAGTCCAGGTAATGTTCACACTGTTGCTGCGCTGGAGTGGCAGTCAGACTCCCACTGCTGTTTTGGCCCATTAACTTCAACGCTCGAGTTGTACAGTAGACTATAATAATAAATCTTGATACATGATCCCATGTGGTAAAGCAGAAACAGTTATAATATGTTCAAGTATACACCAACTATTAATGTCCCTGGCTTGATTGTAATGTAATGAGAATGTGCGGCAGTTAAATCCAGTTATAGCAACTAGGAATTTGACCCTCAAACCAGGCACAGCACATCACTAAGGCTGTGTTTAGACAAGCAgctcaattctgatattttttccactaattggtcttttgaccaatcacatcagatctttctACAACCGATATTTTCCAGATctaattggtcaaaagaccaattaactgagtACAAAAAAAATAGTCACGTATACTTCTCCCCTTTACACACATTTGTCCATGACAGGTTGTTTTTGTTGTAGGTAGGCGATTCCAGCAGTATGAACattacatttgcacacaaaatcACATCTTAATGTTTCAAAGAATGGACAAAGCAAATATAGATGAAACGTTTGATGTGTGCGTCTACAGTACACCTTGGGTGTATAATCAAGAAAGCAGACTTCTAAATATTGGCATGTTGTAAAACGCAAATATGAAGCGTTATTGGTGTTACATGTAGGCCAAGCTTTTTCTGAACATATTAGCAAAAGTCTGAGTTTGTACAACATAGGTCAAAACATGGATATTCATTAAGGAGGAAAGGCATGTCTGA

Function

GO:

id name namespace
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:0005680 anaphase-promoting complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977091.1 False 1488 mRNA 0.40 3 23734921 23736928
XM_021602164.2 False 1559 mRNA 0.40 3 23734921 23736929
XM_036977092.1 False 1456 mRNA 0.40 3 23734921 23736929
TU432639 True 859 lncRNA 0.37 2 23729177 23735459

Neighbor

gene id symbol gene type direction distance location
LOC110523461 hmdh coding downstream 34218 23678282 ~ 23700703 (-)
LOC110523460 NA coding downstream 136386 23590789 ~ 23598535 (-)
LOC110522831 LOC106563032 coding downstream 178240 23488916 ~ 23556681 (-)
LOC110523459 f2r coding downstream 274320 23456339 ~ 23512866 (-)
LOC110523458 LOC106568234 coding downstream 279557 23450567 ~ 23455364 (-)
LOC110523462 LOC106567435 coding upstream 10465 23747394 ~ 23752091 (-)
LOC110523465 LOC106563023 coding upstream 30693 23767622 ~ 23804521 (-)
LOC110523467 LOC106567778 coding upstream 70108 23807037 ~ 23828218 (-)
LOC110523469 NA coding upstream 96929 23833858 ~ 23844687 (-)
pik3r1 LOC106567700 coding upstream 370753 24107682 ~ 24161635 (-)
G380223 NA non-coding downstream 134916 23555190 ~ 23600005 (-)
G380215 NA non-coding downstream 191100 23543346 ~ 23543821 (-)
G380214 NA non-coding downstream 192521 23542113 ~ 23542400 (-)
G380200 NA non-coding downstream 213928 23520466 ~ 23520993 (-)
G380187 NA non-coding downstream 215547 23517588 ~ 23519374 (-)
G380679 NA non-coding upstream 16824 23753753 ~ 23754050 (-)
G380680 NA non-coding upstream 17270 23754199 ~ 23754486 (-)
G380682 NA non-coding upstream 19275 23756204 ~ 23756469 (-)
G380610 LOC106567829 other downstream 23030 23709798 ~ 23711891 (-)
jmy LOC106568093 other downstream 932670 22799696 ~ 22859199 (-)
LOC110523434 LOC106567989 other downstream 1555608 22177265 ~ 22179322 (-)
G378359 NA other downstream 1942928 21791662 ~ 21791993 (-)
G380648 NA other upstream 22110 23759039 ~ 23761807 (-)
LOC110523492 LOC106567536 other upstream 1702092 25437411 ~ 25441794 (-)
G383422 NA other upstream 2259877 25996806 ~ 25998780 (-)
G385617 NA other upstream 4272338 28009267 ~ 28010077 (-)
G385769 NA other upstream 4477614 28214543 ~ 28214819 (-)

Expression


Co-expression Network